protected override Task Context()
{
_parameterMapper = A.Fake <ParameterMapper>();
_outputIntervalFactory = A.Fake <IOutputIntervalFactory>();
sut = new OutputIntervalMapper(_parameterMapper, _outputIntervalFactory);
_outputInterval = new OutputInterval
{
Name = "Interval"
};
_endTimeParameter = DomainHelperForSpecs.ConstantParameterWithValue(1, isDefault: true).WithName(Constants.Parameters.END_TIME);
_resolutionParameter = DomainHelperForSpecs.ConstantParameterWithValue(1, isDefault: true).WithName(Constants.Parameters.RESOLUTION);
_anotherParameter = DomainHelperForSpecs.ConstantParameterWithValue(1, isDefault: false).WithName("Another");
_outputInterval.Add(_endTimeParameter);
_outputInterval.Add(_anotherParameter);
_outputInterval.Add(_resolutionParameter);
_endTimeSnapshotParameter = new Parameter().WithName(_endTimeParameter.Name);
_anotherSnapshotParameter = new Parameter().WithName(_anotherParameter.Name);
_resolutionSnapshotParameter = new Parameter().WithName(_resolutionParameter.Name);
A.CallTo(() => _parameterMapper.MapToSnapshot(_endTimeParameter)).Returns(_endTimeSnapshotParameter);
A.CallTo(() => _parameterMapper.MapToSnapshot(_anotherParameter)).Returns(_anotherSnapshotParameter);
A.CallTo(() => _parameterMapper.MapToSnapshot(_resolutionParameter)).Returns(_resolutionSnapshotParameter);
return(_completed);
}
protected override void Context()
{
base.Context();
_defaultInterval = new OutputInterval();
A.CallTo(() => _outputIntervalFactory.CreateDefault()).Returns(_defaultInterval);
_time = A.Fake <IDimension>();
A.CallTo(() => _time.Name).Returns(Constants.Dimension.TIME);
_resolution = A.Fake <IDimension>();
A.CallTo(() => _resolution.Name).Returns(Constants.Dimension.RESOLUTION);
_startTimeParameter = new PKSimParameter().WithName(Constants.Parameters.START_TIME).WithDimension(_time);
_endTimeParameter = new PKSimParameter().WithName(Constants.Parameters.END_TIME).WithDimension(_time);
_numberOfTimePointParameter = new PKSimParameter().WithName(Constants.Parameters.RESOLUTION).WithDimension(_resolution);
_defaultInterval.Add(_startTimeParameter);
_defaultInterval.Add(_endTimeParameter);
_defaultInterval.Add(_numberOfTimePointParameter);
}
public void TestSerialization()
{
var schema = new OutputSchema();
var interval = new OutputInterval();
var quantitySelection = new OutputSelections();
var solverSettingsFactory = IoC.Resolve <ISolverSettingsFactory>();
var x1 = new SimulationSettings {
Solver = solverSettingsFactory.CreateCVODE(), OutputSchema = schema, OutputSelections = quantitySelection
};
interval.Add(CreateObject <Parameter>().WithName(Constants.Parameters.START_TIME).WithFormula(new ConstantFormula(0)));
interval.Add(CreateObject <Parameter>().WithName(Constants.Parameters.END_TIME).WithFormula(new ConstantFormula(1440)));
interval.Add(CreateObject <Parameter>().WithName(Constants.Parameters.RESOLUTION).WithFormula(new ConstantFormula(240)));
quantitySelection.AddOutput(new QuantitySelection("A|B|C", QuantityType.Protein));
quantitySelection.AddOutput(new QuantitySelection("A|B", QuantityType.Enzyme));
var x2 = SerializeAndDeserialize(x1);
AssertForSpecs.AreEqualSimulationSettings(x2, x1);
}
