public void scanBasedWorkflowTest1()
{
string testFile = @"D:\Data\JIRA_issues\OMCS-149_MS2_not_in_Scans\DsrC_Black_02_6Feb12_Cougar_11-10-11.raw";
string parameterFile =
@"D:\Data\JIRA_issues\OMCS-149_MS2_not_in_Scans\LTQ_Orb_USTags_MS2_THRASH_WithPeaks_Relaxed.xml";
Run run = new RunFactory().CreateRun(testFile);
var parameters = new OldDecon2LSParameters();
parameters.Load(parameterFile);
var workflow = ScanBasedWorkflow.CreateWorkflow(run, parameters);
workflow.OldDecon2LsParameters.HornTransformParameters.UseScanRange = true;
workflow.OldDecon2LsParameters.HornTransformParameters.MinScan = 25;
workflow.OldDecon2LsParameters.HornTransformParameters.MaxScan = 35;
workflow.ExportData = true;
workflow.Execute();
// foreach (var isosResult in run.ResultCollection.ResultList)
// {
// isosResult.Display();
// }
}
public void getRunInfoTest1()
{
var run = new RunFactory().CreateRun(_testdatafile);
Console.WriteLine(TestUtilities.DisplayRunInformation(run));
OldDecon2LSParameters parameters = new OldDecon2LSParameters();
parameters.PeakProcessorParameters.WritePeaksToTextFile = true;
ScanBasedWorkflow workflow = ScanBasedWorkflow.CreateWorkflow(run, new OldDecon2LSParameters());
workflow.Execute();
}
