protected override void Context()
{
base.Context();
var newObserverSetMapping = new ObserverSetMapping();
A.CallTo(() => _observerSetTask.CreateObserverSetMapping(_observerSetTemplate1)).Returns(newObserverSetMapping);
_newObserverSetMappingDTO = new ObserverSetMappingDTO(newObserverSetMapping);
A.CallTo(() => _observerSetDTOMapper.MapFrom(newObserverSetMapping, _simulation)).Returns(_newObserverSetMappingDTO);
}
protected override void Context()
{
base.Context();
var newObserverSetMapping = new ObserverSetMapping();
A.CallTo(() => _observerSetTask.CreateObserverSetMapping(_observerSetTemplate2)).Returns(newObserverSetMapping);
_newObserverSetMappingDTO = new ObserverSetMappingDTO(newObserverSetMapping);
sut.StatusChanged += (o, e) => { _statusChangedNotified = true; };
A.CallTo(() => _observerSetDTOMapper.MapFrom(newObserverSetMapping, _simulation)).Returns(_newObserverSetMappingDTO);
}
public ObserverSetMappingDTO MapFrom(ObserverSetMapping observerSetMapping, Simulation simulation)
{
var observerSetMappingDTO = new ObserverSetMappingDTO(observerSetMapping);
var usedTemplateObserverSet = simulation.UsedBuildingBlockByTemplateId(observerSetMapping.TemplateObserverSetId);
//simulation was already using an event based on template. Retrieved the building block used
var templateObserverSet = _buildingBlockInSimulationManager.TemplateBuildingBlockUsedBy <ObserverSet>(usedTemplateObserverSet) ??
_buildingBlockRepository.All <ObserverSet>().FindById(observerSetMapping.TemplateObserverSetId);
observerSetMappingDTO.ObserverSet = templateObserverSet;
return(observerSetMappingDTO);
}
protected override void Context()
{
_view = A.Fake <ISimulationObserversConfigurationView>();
_observerSetDTOMapper = A.Fake <IObserverSetMappingToObserverSetMappingDTOMapper>();
_observerSetTask = A.Fake <IObserverSetTask>();
_simulationBuildingBlockUpdater = A.Fake <ISimulationBuildingBlockUpdater>();
_buildingBlockSelectionDisplayer = A.Fake <IBuildingBlockSelectionDisplayer>();
sut = new SimulationObserversConfigurationPresenter(_view, _observerSetDTOMapper, _observerSetTask, _simulationBuildingBlockUpdater, _buildingBlockSelectionDisplayer);
_observerSetMapping = new ObserverSetMapping {
TemplateObserverSetId = TEMPLATE_OBSERVER_SET_ID_1
};
_observerSetProperties = new ObserverSetProperties();
_observerSetProperties.AddObserverSetMapping(_observerSetMapping);
_simulation = new IndividualSimulation {
Properties = new SimulationProperties {
ObserverSetProperties = _observerSetProperties
}
};
_observerSetTemplate1 = new ObserverSet().WithName("OBSERVER_SET_1").WithId(TEMPLATE_OBSERVER_SET_ID_1);
_observerSetTemplate2 = new ObserverSet().WithName("ANOTER_OBSERVER_SET_2").WithId(TEMPLATE_OBSERVER_SET_ID_2);
A.CallTo(() => _observerSetTask.All()).Returns(new[] { _observerSetTemplate1, _observerSetTemplate2 });
_observerSetMappingDTO = new ObserverSetMappingDTO(_observerSetMapping)
{
ObserverSet = _observerSetTemplate1
};
A.CallTo(() => _observerSetDTOMapper.MapFrom(_observerSetMapping, _simulation)).Returns(_observerSetMappingDTO);
A.CallTo(() => _view.BindTo(A <IEnumerable <ObserverSetMappingDTO> > ._))
.Invokes(x => _allObserverSetMappingDTO = x.GetArgument <IEnumerable <ObserverSetMappingDTO> >(0));
sut.EditSimulation(_simulation, CreationMode.New);
}
private void addObserverSetMapping(ObserverSetMapping observerSetMapping)
{
_allObserverSetMappingDTOs.Add(_observerSetMappingDTOMapper.MapFrom(observerSetMapping, _simulation));
}
protected override Task Context()
{
_solverSettingsMapper = A.Fake <SolverSettingsMapper>();
_outputSchemaMapper = A.Fake <OutputSchemaMapper>();
_outputSelectionMapper = A.Fake <OutputSelectionsMapper>();
_parameterMapper = A.Fake <ParameterMapper>();
_compoundPropertiesMapper = A.Fake <CompoundPropertiesMapper>();
_advancedParameterMapper = A.Fake <AdvancedParameterMapper>();
_eventMappingMapper = A.Fake <EventMappingMapper>();
_observerSetMappingMapper = A.Fake <ObserverSetMappingMapper>();
_curveChartMapper = A.Fake <SimulationTimeProfileChartMapper>();
_processMappingMapper = A.Fake <ProcessMappingMapper>();
_simulationFactory = A.Fake <ISimulationFactory>();
_executionContext = A.Fake <IExecutionContext>();
_simulationModelCreator = A.Fake <ISimulationModelCreator>();
_simulationBuildingBlockUpdater = A.Fake <ISimulationBuildingBlockUpdater>();
_modelPropertiesTask = A.Fake <IModelPropertiesTask>();
_simulationRunner = A.Fake <ISimulationRunner>();
_populationAnalysisChartMapper = A.Fake <PopulationAnalysisChartMapper>();
_simulationParameterOriginIdUpdater = A.Fake <ISimulationParameterOriginIdUpdater>();
_logger = A.Fake <ILogger>();
_containerTask = A.Fake <IContainerTask>();
_entityPathResolver = A.Fake <IEntityPathResolver>();
sut = new SimulationMapper(_solverSettingsMapper, _outputSchemaMapper,
_outputSelectionMapper, _compoundPropertiesMapper, _parameterMapper,
_advancedParameterMapper, _eventMappingMapper, _observerSetMappingMapper, _curveChartMapper,
_populationAnalysisChartMapper, _processMappingMapper,
_simulationFactory, _executionContext, _simulationModelCreator,
_simulationBuildingBlockUpdater, _modelPropertiesTask,
_simulationRunner, _simulationParameterOriginIdUpdater,
_logger, _containerTask, _entityPathResolver
);
_project = new PKSimProject();
_individual = new Individual {
Name = "IND", Id = "IND"
};
_compound = new Compound {
Name = "COMP", Id = "COMP"
};
_observerSet = new ObserverSet {
Name = "OBS_SET", Id = "OBS_SET"
};
_protocol = new SimpleProtocol {
Name = "PROT", Id = "PROT"
};
_inductionProcess = new InductionProcess().WithName("Interaction process");
_compound.AddProcess(_inductionProcess);
_event = new PKSimEvent {
Name = "Event"
};
_population = new RandomPopulation()
{
Name = "POP"
};
_observedData = new DataRepository("OBS_ID").WithName("OBS");
_project.AddBuildingBlock(_individual);
_project.AddBuildingBlock(_compound);
_project.AddBuildingBlock(_event);
_project.AddBuildingBlock(_population);
_project.AddBuildingBlock(_observerSet);
_project.AddObservedData(_observedData);
_simulationProperties = new SimulationProperties
{
ModelProperties = new ModelProperties
{
ModelConfiguration = new ModelConfiguration {
ModelName = "4Comp"
}
}
};
_interactionSelection = new InteractionSelection {
ProcessName = _inductionProcess.Name
};
_noInteractionSelection = new InteractionSelection {
MoleculeName = "CYP2D6"
};
_simulationProperties.InteractionProperties.AddInteraction(_interactionSelection);
_simulationProperties.InteractionProperties.AddInteraction(_noInteractionSelection);
_settings = new SimulationSettings();
_rootContainer = new Container().WithName("Sim");
_model = new OSPSuite.Core.Domain.Model {
Root = _rootContainer
};
_individualSimulation = new IndividualSimulation
{
Name = "S1",
Properties = _simulationProperties,
SimulationSettings = _settings,
Description = "Simulation Description",
Model = _model
};
_simulationTimeProfile = new SimulationTimeProfileChart();
_snapshotSimulationTimeProfile = new CurveChart();
_individualSimulation.AddAnalysis(_simulationTimeProfile);
A.CallTo(() => _curveChartMapper.MapToSnapshot(_simulationTimeProfile)).Returns(_snapshotSimulationTimeProfile);
_populationSimulation = new PopulationSimulation
{
Properties = _simulationProperties,
SimulationSettings = _settings,
Model = _model
};
_advancedParameterCollection = new AdvancedParameterCollection();
_populationSimulationAnalysisChart = new BoxWhiskerAnalysisChart();
_populationSimulation.SetAdvancedParameters(_advancedParameterCollection);
_populationSimulation.AddAnalysis(_populationSimulationAnalysisChart);
_populationSimulation.AddUsedBuildingBlock(new UsedBuildingBlock("IndTemplateId", PKSimBuildingBlockType.Individual)
{
BuildingBlock = _individual
});
_snapshotPopulationAnalysisChart = new Snapshots.PopulationAnalysisChart();
A.CallTo(() => _populationAnalysisChartMapper.MapToSnapshot(_populationSimulationAnalysisChart)).Returns(_snapshotPopulationAnalysisChart);
_snapshotInteraction = new CompoundProcessSelection();
A.CallTo(() => _processMappingMapper.MapToSnapshot(_interactionSelection)).Returns(_snapshotInteraction);
_snapshotInteraction.CompoundName = _compound.Name;
_snapshotInteraction.Name = _inductionProcess.Name;
_noSelectionSnapshotInteraction = new CompoundProcessSelection();
A.CallTo(() => _processMappingMapper.MapToSnapshot(_noInteractionSelection)).Returns(_noSelectionSnapshotInteraction);
_noSelectionSnapshotInteraction.MoleculeName = _noInteractionSelection.MoleculeName;
_compoundProperties = new CompoundProperties();
_snapshotCompoundProperties = new Snapshots.CompoundProperties {
Name = _compound.Name
};
_individualSimulation.Properties.AddCompoundProperties(_compoundProperties);
_eventMapping = new EventMapping();
_individualSimulation.EventProperties.AddEventMapping(_eventMapping);
_observerSetMapping = new ObserverSetMapping();
_individualSimulation.ObserverSetProperties.AddObserverSetMapping(_observerSetMapping);
A.CallTo(() => _compoundPropertiesMapper.MapToSnapshot(_compoundProperties, _project)).Returns(_snapshotCompoundProperties);
_eventSelection = new EventSelection
{
Name = _event.Name,
};
_observerSetSelection = new ObserverSetSelection
{
Name = _observerSet.Name,
};
_individualSimulation.AddUsedBuildingBlock(new UsedBuildingBlock("IndTemplateId", PKSimBuildingBlockType.Individual)
{
BuildingBlock = _individual,
Altered = true
});
_individualSimulation.AddUsedBuildingBlock(new UsedBuildingBlock("CompTemplateId", PKSimBuildingBlockType.Compound)
{
BuildingBlock = _compound
});
_individualSimulation.AddUsedBuildingBlock(new UsedBuildingBlock("ProtTemplateId", PKSimBuildingBlockType.Protocol)
{
BuildingBlock = _protocol
});
_individualSimulation.AddUsedBuildingBlock(new UsedBuildingBlock("ObserveSetTemplateId", PKSimBuildingBlockType.ObserverSet)
{
BuildingBlock = _observerSet
});
_populationSimulation.AddUsedBuildingBlock(new UsedBuildingBlock("PopTemplateId", PKSimBuildingBlockType.Population)
{
BuildingBlock = _population
});
_individualSimulation.AddUsedObservedData(_observedData);
A.CallTo(() => _eventMappingMapper.MapToSnapshot(_eventMapping, _project)).Returns(_eventSelection);
A.CallTo(() => _observerSetMappingMapper.MapToSnapshot(_observerSetMapping, _project)).Returns(_observerSetSelection);
_outputSelectionSnapshot = new OutputSelections();
A.CallTo(() => _outputSelectionMapper.MapToSnapshot(_individualSimulation.OutputSelections)).Returns(_outputSelectionSnapshot);
A.CallTo(() => _processMappingMapper.MapToModel(_snapshotInteraction, _inductionProcess)).Returns(_interactionSelection);
return(_completed);
}
public ObserverSetMappingDTO(ObserverSetMapping observerSetMapping)
{
ObserverSetMapping = observerSetMapping;
Rules.AddRange(AllRules.All());
}