public override string GetAnnotation(Polymorphism p)
{
if (MutationAssigner.MutationIsComplex(p.Mutation))
{
return(nullAnnotation);
}
else
{
var site = p.Position;
var refBP = Polymorphism.getReferenceBaseSingle(site);
var alt = MutationAssigner.getBase(p.Mutation);
var key = makeQueryString(site, refBP, alt);
if (!positionToData.ContainsKey(key))
{
key = makeQueryString(site, BigTableData.ALL_SITE_SAME, BigTableData.ALL_SITE_SAME);
if (positionToData.ContainsKey(key))
{
return(positionToData[key].Data);
}
return(nullAnnotation);
}
else
{
return(positionToData[key].Data);
}
}
}
public override string GetAnnotation(Polymorphism p)
{
if (MutationAssigner.MutationIsComplex(p.Mutation))
{
return("NA");
}
else
{
var site = p.Position;
if (!positionToFrequency.ContainsKey(site))
{
return("NA");
}
else
{
return(positionToFrequency[site].ToString());
}
}
}
