public void GetOrderedChromosomes()
{
var refIdLookup = new Dictionary <string, int>()
{
{ "chr1", 1 }, { "chrM", 0 }, { "chr3", 3 }, { "chrY", 24 }
};
Assert.Equal(new List <string>()
{
"chrM", "chr1", "chr3", "chrY"
}, MultiProcessHelpers.GetOrderedChromosomes(refIdLookup));
}
public void GetCommandLineWithoutIgnoredArguments()
{
var optionsUsed = new Dictionary <string, string>()
{
{ "--option1", "blah" }, { "-option2", "blah2" }, { "-option1b", "blah1b" }
};
var filteredCmd =
MultiProcessHelpers.GetCommandLineWithoutIgnoredArguments(optionsUsed, new List <string>());
Assert.Equal(6, filteredCmd.Count);
// Remove option2
filteredCmd =
MultiProcessHelpers.GetCommandLineWithoutIgnoredArguments(optionsUsed,
new List <string>()
{
"option2"
});
Assert.Equal(4, filteredCmd.Count);
Assert.Equal("--option1 \"blah\" -option1b \"blah1b\"", string.Join(" ", filteredCmd));
// Remove option2 - demonstrate case insensitivity
filteredCmd =
MultiProcessHelpers.GetCommandLineWithoutIgnoredArguments(optionsUsed,
new List <string>()
{
"OPtioN2"
});
Assert.Equal(4, filteredCmd.Count);
Assert.Equal("--option1 \"blah\" -option1b \"blah1b\"", string.Join(" ", filteredCmd));
// Remove option1 - demonstrate that it works with single dash and double, and that option1 being substring of option1b is fine
filteredCmd =
MultiProcessHelpers.GetCommandLineWithoutIgnoredArguments(optionsUsed,
new List <string>()
{
"option1"
});
Assert.Equal(4, filteredCmd.Count);
Assert.Equal("-option2 \"blah2\" -option1b \"blah1b\"", string.Join(" ", filteredCmd));
// Remove option1b - demonstrate that it works with single dash and double, and that option1 being substring of option1b is fine
filteredCmd =
MultiProcessHelpers.GetCommandLineWithoutIgnoredArguments(optionsUsed,
new List <string>()
{
"option1b"
});
Assert.Equal(4, filteredCmd.Count);
Assert.Equal("--option1 \"blah\" -option2 \"blah2\"", string.Join(" ", filteredCmd));
// Remove multiple
filteredCmd =
MultiProcessHelpers.GetCommandLineWithoutIgnoredArguments(optionsUsed,
new List <string>()
{
"option1b", "option2"
});
Assert.Equal(2, filteredCmd.Count);
Assert.Equal("--option1 \"blah\"", string.Join(" ", filteredCmd));
// Remove all
filteredCmd =
MultiProcessHelpers.GetCommandLineWithoutIgnoredArguments(optionsUsed,
new List <string>()
{
"option1b", "option2", "option1"
});
Assert.Equal(0.0, filteredCmd.Count);
// Ignore stuff that wasn't there to begin with
filteredCmd =
MultiProcessHelpers.GetCommandLineWithoutIgnoredArguments(optionsUsed,
new List <string>()
{
"option1b", "option2", "optionC", "optionD"
});
Assert.Equal(2, filteredCmd.Count);
Assert.Equal("--option1 \"blah\"", string.Join(" ", filteredCmd));
// Throw exception if we're giving junk for argument names to ignore
Assert.Throws <ArgumentException>(() =>
MultiProcessHelpers.GetCommandLineWithoutIgnoredArguments(optionsUsed,
new List <string>()
{
"option1-notallowed"
}));
var optionsUsedHasSpace = new Dictionary <string, string>()
{
{ "--option1", "blah has space" }, { "-option2", "blah2_nospace" }
};
filteredCmd =
MultiProcessHelpers.GetCommandLineWithoutIgnoredArguments(optionsUsedHasSpace, new List <string>());
Assert.Equal(4, filteredCmd.Count);
Assert.Equal("--option1 \"blah has space\" -option2 \"blah2_nospace\"", String.Join(" ", filteredCmd));
}
