public LinkedList<MoleculesSet> loadMoleculesFromFile(TextAsset filePath)
{
bool b = true;
MoleculesSet moleculeSet;
string setId;
LinkedList<MoleculesSet> moleculesSets = new LinkedList<MoleculesSet>();
XmlDocument xmlDoc = new XmlDocument();
xmlDoc.LoadXml(filePath.text);
XmlNodeList moleculesLists = xmlDoc.GetElementsByTagName("molecules");
foreach (XmlNode moleculesNode in moleculesLists)
{
setId = moleculesNode.Attributes["id"].Value;
if (setId != "" && setId != null)
{
ArrayList molecules = new ArrayList();
b &= loadMolecules(moleculesNode, molecules);
moleculeSet = new MoleculesSet();
moleculeSet.id = setId;
moleculeSet.molecules = molecules;
moleculesSets.AddLast(moleculeSet);
}
else
{
Debug.Log("Error : missing attribute id in reactions node");
b = false;
}
}
return moleculesSets;
}
/*!
\brief Load Molecules from a MoleculesSet
\param molSet The set to Load
\param allMolecules The list of all the molecules
*/
public void initMoleculesFromMoleculesSets(MoleculesSet molSet, ArrayList allMolecules)
{
Molecule newMol;
Molecule startingMolStatus;
_molecules = new ArrayList();
foreach (Molecule mol in allMolecules)
{
newMol = new Molecule(mol);
startingMolStatus = ReactionEngine.getMoleculeFromName(mol.getName(), molSet.molecules);
if (startingMolStatus == null)
newMol.setConcentration(0);
else
newMol.setConcentration(startingMolStatus.getConcentration());
_molecules.Add(newMol);
}
}
