public void DetermineExonicEffect_OverlapWithMicroRna()
{
IInterval variant = new Interval(3477284, 3477284);
var position = new MappedPosition(71, 71, -1, -1, -1, -1, 1, 1, -1, -1, 0, 0);
var positionalEffect = new TranscriptPositionalEffect();
positionalEffect.DetermineExonicEffect(_reverseTranscript.Object, variant, position, 71, 71, -1, -1, "G", false);
Assert.True(positionalEffect.OverlapWithMicroRna);
}
public void DetermineExonicEffect_WithinCdna()
{
IInterval variant = new Interval(879600, 879600);
var position = new MappedPosition(1692, 1692, -1, -1, -1, -1, 7, 7, -1, -1, 12, 12);
var positionalEffect = new TranscriptPositionalEffect();
positionalEffect.DetermineExonicEffect(_forwardTranscript.Object, variant, position, 1692, 1692, -1, -1, "G", false);
Assert.True(positionalEffect.WithinCdna);
}
public void DetermineExonicEffect_WithinCds()
{
IInterval variant = new Interval(876543, 876543);
var position = new MappedPosition(206, 206, 206, 206, 69, 69, 2, 2, -1, -1, 2, 2);
var positionalEffect = new TranscriptPositionalEffect();
positionalEffect.DetermineExonicEffect(_forwardTranscript.Object, variant, position, 206, 206, 206, 206, "G", false);
Assert.True(positionalEffect.WithinCdna);
}
public void DetermineExonicEffect_HasExonOverlap()
{
IInterval variant = new Interval(876686, 876686);
var position = new MappedPosition(349, 349, 349, 349, 117, 117, 2, 2, -1, -1, 2, 2);
var positionalEffect = new TranscriptPositionalEffect();
positionalEffect.DetermineExonicEffect(_forwardTranscript.Object, variant, position, 349, 349, 349, 349, "G", false);
Assert.True(positionalEffect.HasExonOverlap);
}
