public void Link(MapLinkFilter.LinkType type)
{
this.Map = TssRegulatoryMap.LoadMap(this.MapFileName, new MapLinkFilter {
LinkTypeFilter = type
});
NullMapBuilder.WriteMap(this.Map, this.ExpressionData.Genes, this.HistoneName, this.OutputFile);
}
public void FilterMap(MapLinkFilter.LinkType linkType)
{
var mapLinkFilter = new MapLinkFilter
{
LinkTypeFilter = linkType,
};
var map = TssRegulatoryMap.LoadMap(this.MapFileName, mapLinkFilter);
var outputMapFile = this.MapFileName.Replace(".bed", "." + linkType.ToString() + ".bed");
var tssSet = this.GeneMap ?
this.ExpressionFiles.First().Value.Genes :
this.ExpressionFiles.First().Value.Transcripts;
WriteMap(map, tssSet, this.HistoneName, outputMapFile);
}
