public RGen2Pass2( LinksDataSet dsLinks, LinksDataSet.tblRelatedStructureRow drLeft, LinksDataSet.tblRelatedStructureRow drRight )
{
//ImportDataSet dsImport,
if ( dsLinks == null ) throw new ArgumentNullException("dsLinks");
if ( drLeft == null ) throw new ArgumentNullException("drLeft");
if ( drRight == null ) throw new ArgumentNullException("drRight");
if ( dsLinks.tblRelatedValues.Count == 0 ) throw new InvalidOperationException("tblRelatedValues must be empty before updating rows for it.");
if ( dsLinks.tblMzManual.Count == 0 ) throw new InvalidOperationException("tblMzManual must NOT be empty before assigning R values from it.");
if ( dsLinks.tblSubject.Count == 0 ) throw new InvalidOperationException("tblSubject must NOT be empty before assigning R values from it.");
if ( dsLinks.tblSubjectDetails.Count == 0 ) throw new InvalidOperationException("tblSubjectDetails must NOT be empty before assigning R values from it.");
if ( dsLinks.tblMarkerGen2.Count == 0 ) throw new InvalidOperationException("tblMarkerGen2 must NOT be empty before assigning R values from it.");
_dsLinks = dsLinks;
_drLeft = drLeft;
_drRight = drRight;
_idRelatedLeft = _drLeft.ID;
_idRelatedRight = _drRight.ID;
_drSubjectDetails1 = _dsLinks.tblSubjectDetails.FindBySubjectTag(drLeft.SubjectTag_S1);
_drSubjectDetails2 = _dsLinks.tblSubjectDetails.FindBySubjectTag(drLeft.SubjectTag_S2);
_extendedID = _drLeft.tblSubjectRowByFK_tblRelatedStructure_tblSubject_Subject1.ExtendedID;
if ( _drSubjectDetails1.BirthOrderInNls <= _drSubjectDetails2.BirthOrderInNls ) {//This is the way it usually is. Recall twins were assigned tied birth orders
_idRelatedOlderAboutYounger = _idRelatedLeft;
}
else if ( _drSubjectDetails1.BirthOrderInNls > _drSubjectDetails2.BirthOrderInNls ) {
_idRelatedOlderAboutYounger = _idRelatedRight;
}
_drValue = _dsLinks.tblRelatedValues.FindByID(_idRelatedLeft);
_dtMarkersGen2 = MarkerGen2.PairRelevantMarkerRows(_idRelatedLeft, _idRelatedRight, _dsLinks, _extendedID);
MarkerEvidence babyDaddyDeathDate = MarkerGen2.RetrieveBiodadMarkerFromGen1(_idRelatedOlderAboutYounger, MarkerType.BabyDaddyDeathDate, _dtMarkersGen2);
MarkerEvidence babyDaddyAlive = MarkerGen2.RetrieveBiodadMarkerFromGen1(_idRelatedOlderAboutYounger, MarkerType.BabyDaddyAlive, _dtMarkersGen2);
MarkerEvidence babyDaddyInHH = MarkerGen2.RetrieveBiodadMarkerFromGen1(_idRelatedOlderAboutYounger, MarkerType.BabyDaddyInHH, _dtMarkersGen2);
MarkerEvidence babyDaddyLeftHHDate = MarkerGen2.RetrieveBiodadMarkerFromGen1(_idRelatedOlderAboutYounger, MarkerType.BabyDaddyLeftHHDate, _dtMarkersGen2);
MarkerEvidence babyDaddyDistanceFromHH = MarkerGen2.RetrieveBiodadMarkerFromGen1(_idRelatedOlderAboutYounger, MarkerType.BabyDaddyDistanceFromHH, _dtMarkersGen2);
MarkerEvidence fatherAlive = MarkerGen2.RetrieveBiodadMarkerFromGen1(_idRelatedOlderAboutYounger, MarkerType.Gen2CFatherAlive, _dtMarkersGen2);
MarkerEvidence fatherInHH = MarkerGen2.RetrieveBiodadMarkerFromGen1(_idRelatedOlderAboutYounger, MarkerType.Gen2CFatherInHH, _dtMarkersGen2);
MarkerEvidence fatherDistanceFromHH = MarkerGen2.RetrieveBiodadMarkerFromGen1(_idRelatedOlderAboutYounger, MarkerType.Gen2CFatherDistanceFromHH, _dtMarkersGen2);
_rImplicitMother = CalculateRImplicitMother(babyDaddyDeathDate, babyDaddyAlive, babyDaddyInHH, babyDaddyLeftHHDate, babyDaddyDistanceFromHH);
_rImplicitSubject = CalculateRImplicitSubject(fatherAlive, fatherInHH, fatherDistanceFromHH);
_rImplicit = CalculateRImplicit(_rImplicitMother, _rImplicitSubject);
_rExplicit = CalculateRExplicit();
_rFull = CalculateRFull();
_rPeek = CalculateRPeek();
}
internal static LinksDataSet.tblMarkerGen2DataTable PairRelevantMarkerRows( Int64 relatedIDLeft, Int64 relatedIDRight, LinksDataSet dsLinks, Int32 extendedID )
{
string select = string.Format("{0}={1} AND {2} IN ({3},{4})",
extendedID, dsLinks.tblMarkerGen2.ExtendedIDColumn.ColumnName,
dsLinks.tblMarkerGen2.RelatedIDColumn.ColumnName, relatedIDLeft, relatedIDRight);
LinksDataSet.tblMarkerGen2Row[] drs = (LinksDataSet.tblMarkerGen2Row[])dsLinks.tblMarkerGen2.Select(select);
//if ( drs.Length <= 0 ) {
// return null;
//}
//else {
LinksDataSet.tblMarkerGen2DataTable dt = new LinksDataSet.tblMarkerGen2DataTable();
foreach ( LinksDataSet.tblMarkerGen2Row dr in drs ) {
dt.ImportRow(dr);
}
return dt;
}
public RGen2Pass1( ImportDataSet dsImport, LinksDataSet dsLinks, LinksDataSet.tblRelatedStructureRow drLeft, LinksDataSet.tblRelatedStructureRow drRight )
{
if ( dsImport == null ) throw new ArgumentNullException("dsImport");
if ( dsLinks == null ) throw new ArgumentNullException("dsLinks");
if ( drLeft == null ) throw new ArgumentNullException("drLeft");
if ( drRight == null ) throw new ArgumentNullException("drRight");
if ( dsImport.tblLinks2004Gen2.Count == 0 ) throw new InvalidOperationException("tblLinks2004Gen2 must NOT be empty before assigning R values from it.");
if ( dsLinks.tblMzManual.Count == 0 ) throw new InvalidOperationException("tblMzManual must NOT be empty before assigning R values from it.");
if ( dsLinks.tblSubject.Count == 0 ) throw new InvalidOperationException("tblSubject must NOT be empty before assigning R values from it.");
if ( dsLinks.tblSubjectDetails.Count == 0 ) throw new InvalidOperationException("tblSubjectDetails must NOT be empty before assigning R values from it.");
if ( dsLinks.tblMarkerGen2.Count == 0 ) throw new InvalidOperationException("tblMarkerGen2 must NOT be empty before assigning R values from it.");
_dsImport = dsImport;
_dsLinks = dsLinks;
_drLeft = drLeft;
_drRight = drRight;
_idRelatedLeft = _drLeft.ID;
_idRelatedRight = _drRight.ID;
_drBare1 = _dsLinks.tblSubject.FindBySubjectTag(drLeft.SubjectTag_S1);
_drBare2 = _dsLinks.tblSubject.FindBySubjectTag(drLeft.SubjectTag_S2);
_drSubjectDetails1 = _dsLinks.tblSubjectDetails.FindBySubjectTag(drLeft.SubjectTag_S1);
_drSubjectDetails2 = _dsLinks.tblSubjectDetails.FindBySubjectTag(drLeft.SubjectTag_S2);
_extendedID = _drLeft.tblSubjectRowByFK_tblRelatedStructure_tblSubject_Subject1.ExtendedID;
if ( _drSubjectDetails1.BirthOrderInNls <= _drSubjectDetails2.BirthOrderInNls ) {//This is the way it usually is. Recall twins were assigned tied birth orders
_idRelatedOlderAboutYounger = _idRelatedLeft;
_idRelatedYoungerAboutOlder = _idRelatedRight;
}
else if ( _drSubjectDetails1.BirthOrderInNls > _drSubjectDetails2.BirthOrderInNls ) {
_idRelatedOlderAboutYounger = _idRelatedRight;
_idRelatedYoungerAboutOlder = _idRelatedLeft;
}
_dtMarkersGen2 = MarkerGen2.PairRelevantMarkerRows(_idRelatedLeft, _idRelatedRight, _dsLinks, _extendedID);
LinksDataSet.tblMzManualRow drMzManual = Retrieve.MzManualRecord(_drBare1, _drBare2, _dsLinks);
if ( drMzManual == null ) {
_multipleBirth = MultipleBirth.No;
_isMZ = Tristate.No;
}
else {
_multipleBirth = (MultipleBirth)drMzManual.MultipleBirthIfSameSex;
_isMZ = (Tristate)drMzManual.IsMz;
}
MarkerEvidence babyDaddyDeathDate = MarkerGen2.RetrieveBiodadMarkerFromGen1(_idRelatedOlderAboutYounger, MarkerType.BabyDaddyDeathDate, _dtMarkersGen2);
MarkerEvidence babyDaddyAlive = MarkerGen2.RetrieveBiodadMarkerFromGen1(_idRelatedOlderAboutYounger, MarkerType.BabyDaddyAlive, _dtMarkersGen2);
MarkerEvidence babyDaddyInHH = MarkerGen2.RetrieveBiodadMarkerFromGen1(_idRelatedOlderAboutYounger, MarkerType.BabyDaddyInHH, _dtMarkersGen2);
MarkerEvidence babyDaddyLeftHHDate = MarkerGen2.RetrieveBiodadMarkerFromGen1(_idRelatedOlderAboutYounger, MarkerType.BabyDaddyLeftHHDate, _dtMarkersGen2);
MarkerEvidence babyDaddyDistanceFromHH = MarkerGen2.RetrieveBiodadMarkerFromGen1(_idRelatedOlderAboutYounger, MarkerType.BabyDaddyDistanceFromHH, _dtMarkersGen2);
MarkerEvidence babyDaddyAsthma = MarkerGen2.RetrieveBiodadMarkerFromGen1(_idRelatedOlderAboutYounger, MarkerType.BabyDaddyAsthma, _dtMarkersGen2);
_rImplicitPass1 = CalculateRImplicitPass1(babyDaddyDeathDate, babyDaddyAlive, babyDaddyInHH, babyDaddyLeftHHDate, babyDaddyDistanceFromHH, babyDaddyAsthma);
//_rImplicit not set;
_rImplicit2004 = RetrieveRImplicit2004();
_rExplicitOldestSibVersion = CalculateRExplicitOldestSibVersion();
_rExplicitYoungestSibVersion = CalculateRExplicitYoungestSibVersion();
_rExplicitPass1 = CalculateRExplicitPass1(_isMZ, _multipleBirth);
//_rExplicit not set;
_rPass1 = CalculateRPass1();
//_r not set;
//_rPeek not set;
}
