コード例 #1
0
ファイル: AUP.cs プロジェクト: plwp/uploader-agent
    public static bool MarkCaseComplete(string RcaseId, string username, string DbCaseId)
    {
        try
        {
            var        user    = AOA.GetUserRefreshIfNecessary(username, DbCaseId);
            var        api     = ACFG.GetSiteApiDetails();
            WebRequest request = WebRequest.Create(api.cases_url + RcaseId + "/mark_upload_finished");
            request.Method = "PUT";
            //request.ContentType = "application/json";
            request.Headers.Add("Authorization", "Bearer " + user.access_token);

            WebResponse            response           = request.GetResponse();
            var                    dataStream         = response.GetResponseStream();
            System.IO.StreamReader reader             = new System.IO.StreamReader(dataStream);
            string                 responseFromServer = reader.ReadToEnd();
            if (string.IsNullOrEmpty(responseFromServer))
            {
                throw new Exception("Unable to get response from server when marking case complete");
            }
            reader.Close();
            dataStream.Close();
            response.Close();
            var respObj = JsonConvert.DeserializeObject <CaseResponse>(responseFromServer);
            LOG.InsertEvent("Successfully marked study as completed on Radiopaedia", "API", responseFromServer, DbCaseId);
            return(true);
        }
        catch (Exception ex)
        {
            string errorString = "Error at :" + System.Reflection.MethodBase.GetCurrentMethod().Name;
            LOG.Write(errorString);
            LOG.Write(ex.Message);
            LOG.InsertEvent(errorString, "API", ex.Message, DbCaseId);
            return(false);
        }
    }
コード例 #2
0
ファイル: AOA.cs プロジェクト: plwp/uploader-agent
 public static User GetUserRefreshIfNecessary(string username, string caseid)
 {
     try
     {
         APetaPoco.SetConnectionString("cn1");
         var bm = APetaPoco.PpRetrieveOne <User>("Users", "[username] = '" + username + "'");
         if (!bm.Success)
         {
             throw new Exception("Unable to retrieve user details for case: " + username);
         }
         var user = (User)bm.Data;
         if (DateTime.Now > user.expiry_date.Value.AddMinutes(-30))
         {
             RefreshToken(user.refresh_token, caseid);
             bm = APetaPoco.PpRetrieveOne <User>("Users", "[username] = '" + username + "'");
             if (!bm.Success)
             {
                 throw new Exception("Unable to retrieve UPDATED user details for case: " + username);
             }
             user = (User)bm.Data;
         }
         return(user);
     }
     catch (Exception ex)
     {
         string errorString = "Error at :" + System.Reflection.MethodBase.GetCurrentMethod().Name;
         LOG.Write(errorString);
         LOG.Write(ex.Message);
         LOG.InsertEvent(errorString, "API", ex.Message, caseid);
         return(null);
     }
     finally { GC.Collect(); }
 }
コード例 #3
0
ファイル: AUP.cs プロジェクト: plwp/uploader-agent
    public static bool UploadZip2(string RcaseId, string studyId, string zipPath, string username, string DbCaseId, string stydyUid)
    {
        var api  = ACFG.GetSiteApiDetails();
        var user = AOA.GetUserRefreshIfNecessary(username, DbCaseId);
        // Build request
        var request = (HttpWebRequest)WebRequest.Create(api.cases_url + RcaseId + "/studies/" + studyId + "/images");

        request.Method = WebRequestMethods.Http.Post;
        request.AllowWriteStreamBuffering = false;
        request.ContentType      = "application/zip";
        request.Timeout          = 60 * 60 * 1000;
        request.ReadWriteTimeout = 60 * 60 * 1000;
        string fileName = Path.GetFileName(zipPath);

        request.Headers["Content-Disposition"] = string.Format("attachment; filename=\"{0}\"", fileName);
        request.Headers.Add("Authorization", "Bearer " + user.access_token);

        try
        {
            // Open source file
            using (var fileStream = File.OpenRead(zipPath))
            {
                // Set content length based on source file length
                request.ContentLength = fileStream.Length;

                // Get the request stream with the default timeout
                using (var requestStream = request.GetRequestStream())
                {
                    // Upload the file with no timeout
                    fileStream.CopyTo(requestStream);
                }
            }
            using (var response = request.GetResponse())
                using (var responseStream = response.GetResponseStream())
                    using (var reader = new StreamReader(responseStream))
                    {
                        var respObj = JsonConvert.DeserializeObject <UploadResponse>(reader.ReadToEnd());
                        LOG.Write("Uploaded Filename: " + respObj.filename);
                        LOG.InsertEvent("Successfully uploaded ZIP", "API", reader.ReadToEnd(), DbCaseId, stydyUid);
                    }
        }
        catch (WebException ex)
        {
            if (ex.Status == WebExceptionStatus.Timeout)
            {
                //LogError(ex, "Timeout while uploading '{0}'", fileName);
                LOG.InsertEvent("Timeout While uploading: " + zipPath, "API", ex.Message, DbCaseId, stydyUid);
                LOG.Write("Timeout Uploading");
                LOG.Write(ex.Message);
            }
            else
            {
                LOG.InsertEvent("Error While uploading: " + zipPath, "API", ex.Message, DbCaseId, stydyUid);
                LOG.Write("Error Uploading");
                LOG.Write(ex.Message);
            }
            return(false);
        }
        return(true);
    }
コード例 #4
0
ファイル: AUP.cs プロジェクト: plwp/uploader-agent
    public static bool UploadZip(string RcaseId, string studyId, string zipPath, string username, string DbCaseId, string stydyUid)
    {
        try
        {
            var    fi   = new FileInfo(zipPath);
            byte[] data = File.ReadAllBytes(zipPath);
            string responseFromServer = null;
            try
            {
                var api  = ACFG.GetSiteApiDetails();
                var user = AOA.GetUserRefreshIfNecessary(username, DbCaseId);
                //WebRequest request = WebRequest.Create(api.cases_url + RcaseId + "/studies/" + studyId + "/images");

                HttpWebRequest request = (HttpWebRequest)WebRequest.Create(api.cases_url + RcaseId + "/studies/" + studyId + "/images");
                request.ContentType = "application/zip";
                request.Method      = "POST";
                request.ServicePoint.Expect100Continue = true;
                request.Timeout     = 60 * 60 * 1000;
                request.Method      = "POST";
                request.ContentType = "application/zip";
                request.Headers.Add("Authorization", "Bearer " + user.access_token);

                Stream stream = request.GetRequestStream();
                stream.Write(data, 0, data.Length);
                stream.Close();

                WebResponse            response   = request.GetResponse();
                var                    dataStream = response.GetResponseStream();
                System.IO.StreamReader reader     = new System.IO.StreamReader(dataStream);
                responseFromServer = reader.ReadToEnd();
                reader.Close();
                dataStream.Close();
                response.Close();
            }
            catch (WebException ex)
            {
                using (var stream = ex.Response.GetResponseStream())
                    using (var reader = new StreamReader(stream))
                    {
                        string errorResponse = reader.ReadToEnd();
                        LOG.InsertEvent("Unable to upload zip: " + fi.Name, "API", errorResponse, DbCaseId, stydyUid);
                    }
                return(false);
            }

            var respObj = JsonConvert.DeserializeObject <UploadResponse>(responseFromServer);
            LOG.Write("Uploaded Filename: " + respObj.filename);
            LOG.InsertEvent("Successfully uploaded ZIP", "API", responseFromServer, DbCaseId, stydyUid);
            return(true);
        }
        catch (Exception ex)
        {
            string errorString = "Error at :" + System.Reflection.MethodBase.GetCurrentMethod().Name;
            LOG.Write(errorString);
            LOG.Write(ex.Message);
            LOG.InsertEvent(errorString, "API", ex.Message, DbCaseId, stydyUid);
            return(false);
        }
        finally { GC.Collect(); }
    }
コード例 #5
0
ファイル: AOA.cs プロジェクト: plwp/uploader-agent
 public static void RefreshToken(string refreshToken, string caseid)
 {
     try
     {
         var    api = ACFG.GetSiteApiDetails();
         string responseFromServer = null;
         try
         {
             WebRequest request = WebRequest.Create(api.oauth_url + "token?client_id=" + api.site_id + "&client_secret=" + api.site_secret + "&refresh_token=" + refreshToken + "&grant_type=refresh_token");
             request.Method = "POST";
             WebResponse            response   = request.GetResponse();
             var                    dataStream = response.GetResponseStream();
             System.IO.StreamReader reader     = new System.IO.StreamReader(dataStream);
             responseFromServer = reader.ReadToEnd();
             reader.Close();
             dataStream.Close();
             response.Close();
         }
         catch (WebException ex)
         {
             using (var stream = ex.Response.GetResponseStream())
                 using (var reader = new System.IO.StreamReader(stream))
                 {
                     string errorResponse = reader.ReadToEnd();
                     LOG.InsertEvent("Unable to upload zip", "API", errorResponse, caseid);
                 }
             GC.Collect();
             return;
         }
         var tokenResp = JsonConvert.DeserializeObject <TokenResponse>(responseFromServer);
         if (tokenResp == null || tokenResp == default(TokenResponse))
         {
             throw new Exception("Unable to retrieve valid token response");
         }
         APetaPoco.SetConnectionString("cn1");
         var bm = APetaPoco.PpRetrieveOne <User>("Users", "[refresh_token] = '" + refreshToken + "'");
         if (bm.Success)
         {
             var user = (User)bm.Data;
             user.access_token  = tokenResp.access_token;
             user.refresh_token = tokenResp.refresh_token;
             user.expiry_date   = DateTime.Now.AddSeconds(tokenResp.expires_in - 10);
             bm = APetaPoco.PpUpdate(user);
             if (!bm.Success)
             {
                 throw new Exception("Unable to update user details with new token");
             }
         }
     }
     catch (Exception ex)
     {
         string errorString = "Error at :" + System.Reflection.MethodBase.GetCurrentMethod().Name;
         LOG.Write(errorString);
         LOG.Write(ex.Message);
         LOG.InsertEvent(errorString, "API", ex.Message, caseid);
     }
     finally { GC.Collect(); }
 }
コード例 #6
0
 public static bool ZipSeries(DbStudy study)
 {
     try
     {
         string scpPath    = ADCM.GetStoreString();
         string outputPath = Path.Combine(scpPath, "OUTPUT", study.case_id, study.study_uid);
         if (!Directory.Exists(outputPath))
         {
             throw new Exception("Output path not found: " + outputPath);
         }
         var seriesPaths = Directory.GetDirectories(outputPath);
         foreach (var s in seriesPaths)
         {
             //ReorderImages(s);
             var    seriesUID = s.Substring(s.LastIndexOf(Path.DirectorySeparatorChar) + 1);
             string zipPath   = Path.Combine(outputPath, seriesUID + ".zip");
             using (ZipFile zip = new ZipFile())
             {
                 zip.CompressionLevel = Ionic.Zlib.CompressionLevel.BestSpeed;
                 zip.AddDirectory(s);
                 zip.Save(zipPath);
             }
             FileInfo zipInfo   = new FileInfo(zipPath);
             double   megabytes = Math.Round((zipInfo.Length / 1024f) / 1024f, 2);
             LOG.Write("Zip created: " + zipInfo.Name + ", " + megabytes + " MB");
             LOG.InsertEvent("Zip created: " + zipInfo.Name + " - " + megabytes + "MB", "IMG", null, study.case_id, study.study_uid, seriesUID);
             System.Threading.Thread.Sleep(500);
         }
         LOG.InsertEvent("Successfully created ZIP files for all series in study", "IMG", null, study.case_id, study.study_uid);
         return(true);
     }
     catch (Exception ex)
     {
         string errorString = "Error at :" + System.Reflection.MethodBase.GetCurrentMethod().Name;
         LOG.Write(errorString);
         LOG.Write(ex.Message);
         LOG.InsertEvent(errorString, "IMG", ex.Message, study.case_id, study.study_uid);
         return(false);
     }
 }
コード例 #7
0
ファイル: ADCM.cs プロジェクト: plwp/uploader-agent
    public static bool DownloadStudy(DbStudy study, int retryCount = 0)
    {
        foreach (var se in study.series)
        {
            bool success = DownloadOneSeries(study.study_uid, se.series_uid);
            if (!success)
            {
                return(false);
            }
        }
        return(true);

        //LOG.Write(string.Format("Downloading study [{0}] - {1} ({2})", study.modality, study.description, study.images));
        //LOG.Write("Retry Count: " + retryCount);
        //var node = GetSelectedNode();
        //var cstore = new DicomSCP(node.LocalAe, 104);

        //StudyRootFindScu findScu = new StudyRootFindScu();
        //StudyQueryIod queryMessage = new StudyQueryIod();
        //queryMessage.SetCommonTags();
        //queryMessage.StudyInstanceUid = study.study_uid;
        //IList<StudyQueryIod> results = findScu.Find(node.LocalAe, node.AET, node.IP, node.Port, queryMessage);
        //if (results.Count != 1)
        //    throw new Exception(string.Format("Unable to query study on PACS: [{0}]", study.study_uid));

        //if (!System.IO.Directory.Exists(node.LocalStorage))
        //    System.IO.Directory.CreateDirectory(node.LocalStorage);
        //cstore.Start();
        //while (!cstore.IsRunning)
        //    System.Threading.Thread.Sleep(1000);
        //string singleSeriesOnly = System.Configuration.ConfigurationManager.AppSettings["singleSeries"];

        //MoveScuBase moveScu = new StudyRootMoveScu(node.LocalAe, node.AET, node.IP, node.Port, node.LocalAe);
        //moveScu.ReadTimeout = 600000;
        //moveScu.WriteTimeout = 600000;
        //moveScu.AddStudyInstanceUid(study.study_uid);
        //foreach (var se in study.series)
        //{
        //    moveScu.AddSeriesInstanceUid(se.series_uid);
        //    System.Diagnostics.Debug.WriteLine(se.series_uid);
        //}
        //moveScu.Move();
        //System.Threading.Thread.Sleep(2000);
        //if (moveScu.Status == ScuOperationStatus.AssociationRejected || moveScu.Status == ScuOperationStatus.Canceled ||
        //    moveScu.Status == ScuOperationStatus.ConnectFailed || moveScu.Status == ScuOperationStatus.Failed ||
        //    moveScu.Status == ScuOperationStatus.NetworkError || moveScu.Status == ScuOperationStatus.TimeoutExpired ||
        //    moveScu.Status == ScuOperationStatus.UnexpectedMessage || moveScu.FailureSubOperations != 0)
        //{
        //    if (retryCount > 4)
        //        throw new Exception(string.Format("Failed moving study [{0}] | Status : {1} | Failed Operations: {2}", study.study_uid, moveScu.Status, moveScu.FailureSubOperations));
        //    retryCount += 1;
        //    if (cstore.IsRunning)
        //        cstore.Stop();
        //    DownloadStudy(study, retryCount);
        //}
        //else
        //{
        //    System.Threading.Thread.Sleep(2000);
        //    cstore.Stop();
        //}
        //if (cstore.IsRunning)
        //    cstore.Stop();
        //LOG.InsertEvent("Successfully downloaded study: " + study.description, "DICOM", null, study.case_id, study.study_uid);
        //return true;

        try
        {
        }
        catch (Exception ex)
        {
            string errorString = "Error at :" + System.Reflection.MethodBase.GetCurrentMethod().Name;
            LOG.Write(errorString);
            LOG.Write(ex.Message);
            LOG.InsertEvent(errorString, "DICOM", ex.Message, study.case_id, study.study_uid);
            return(false);
        }
    }
コード例 #8
0
ファイル: ACASE.cs プロジェクト: plwp/uploader-agent
    public static void ProcessCase(DbCase pcase)
    {
        try
        {
            LOG.Write("Checking user quotas...");
            if (!CheckQuotas(pcase))
            {
                throw new Exception("Quota exceeded");
            }
            LOG.Write("Creating case on Radiopaedia...");
            pcase.r_case_id = AUP.CreateCase(pcase);
            if (string.IsNullOrEmpty(pcase.r_case_id))
            {
                throw new Exception("Unable to create case id, cannot continue");
            }
            LOG.Write("Case created id: " + pcase.r_case_id);

            if (pcase.study_list == null || pcase.study_list.Count < 1)
            {
                pcase.study_list = GetStudiesForCase(pcase.case_id);
                if (pcase.study_list == null || pcase.study_list.Count < 1)
                {
                    throw new Exception("No studies in case: " + pcase.case_id);
                }
            }

            foreach (var st in pcase.study_list)
            {
                LOG.InsertEvent("Starting to process case: " + pcase.case_id, "AGENT", null, pcase.case_id);
                LOG.Write("Creating Radiopaedia Study...");
                st.r_study_id = AUP.CreateStudy(st, pcase.username, pcase.r_case_id);
                if (string.IsNullOrEmpty(st.r_study_id))
                {
                    throw new Exception("Unable to create study id on Radiopaedia");
                }
                LOG.Write("Study ID created: " + st.r_study_id);

                LOG.Write("Study: " + st.description + "[" + st.modality + "]");
                LOG.Write("Downloading...");
                bool downloadComplete = ADCM.DownloadStudy(st, 0);
                if (!downloadComplete)
                {
                    ClearCaseFiles(pcase);
                    throw new Exception("Unable to download study - can't continue");
                }
                LOG.Write("Download finished");
                LOG.Write("Converting DCM to PNG...");
                AIMG.MultiFrameProcess(st);
                bool convertComplete = AIMG.ConvertDcmToPng(st);
                if (!convertComplete)
                {
                    ClearCaseFiles(pcase);
                    throw new Exception("Unable to convert study to PNG");
                }
                LOG.Write("Completed image conversion");

                LOG.Write("Deleting excess images...");
                AIMG.DeleteExcessImages(st);
                LOG.Write("Completed deleting excess images.");

                LOG.Write("Optimizing PNG's for study...");
                AIMG.OptiPng(st);
                LOG.Write("Completed optimization.");

                bool zipComplete = AIMG.ZipSeries(st);
                if (!zipComplete)
                {
                    throw new Exception("Unable to create zips for study");
                }


                string outPath = Path.Combine(ADCM.GetStoreString(), "OUTPUT", pcase.case_id, st.study_uid);
                var    zips    = Directory.GetFiles(outPath, "*.zip");
                foreach (var z in zips)
                {
                    string fileName = Path.GetFileName(z);

                    string[] sizes = { "B", "KB", "MB", "GB" };
                    double   len   = new FileInfo(z).Length;
                    int      order = 0;
                    while (len >= 1024 && ++order < sizes.Length)
                    {
                        len = len / 1024;
                    }

                    LOG.Write(string.Format("Uploading: {2} ({0:0.##} {1})", len, sizes[order], fileName));
                    bool uploadedZip = AUP.UploadZip2(pcase.r_case_id, st.r_study_id, z, pcase.username, pcase.case_id, st.study_uid);
                    if (!uploadedZip)
                    {
                        try
                        {
                            LOG.Write("Retry maxed out, copying zip to error output");
                            string errorFolder = Path.Combine(@".\Error_uploads\", pcase.case_id);
                            if (!Directory.Exists(errorFolder))
                            {
                                Directory.CreateDirectory(errorFolder);
                            }
                            string errorPath = Path.Combine(errorFolder, fileName);
                            File.Copy(z, errorPath);
                        }
                        catch
                        {
                            continue;
                        }
                    }
                    LOG.Write("Finished uploading");
                }
            }
            LOG.Write("Marking case as completed");
            AUP.MarkCaseComplete(pcase.r_case_id, pcase.username, pcase.case_id);
            SetCaseStatus(pcase, "COMPLETED", "Case fully uploaded: http://radiopaedia.org/cases/" + pcase.r_case_id);
            System.Threading.Thread.Sleep(1000);
            LOG.Write("Finished with case: " + pcase.case_id);
            ClearCaseFiles(pcase);
            LOG.InsertEvent("Finished with case: " + pcase.case_id, "AGENT", null, pcase.case_id);
        }
        catch (Exception ex)
        {
            string errorString = "Error at :" + System.Reflection.MethodBase.GetCurrentMethod().Name;
            LOG.Write(errorString);
            LOG.Write(ex.Message);
            LOG.InsertEvent(errorString, "AGENT", ex.Message, pcase.case_id);
            SetCaseStatus(pcase, "ERROR", ex.Message);
            ClearCaseFiles(pcase);
        }
        finally { GC.Collect(); }
    }
コード例 #9
0
    public static bool ConvertDcmToPng(DbStudy study)
    {
        try
        {
            string dcmPath   = ADCM.GetStoreString();
            string studyPath = Path.Combine(dcmPath, study.study_uid);
            if (!Directory.Exists(studyPath))
            {
                throw new Exception("Study path not found");
            }
            var allSeriesPaths = Directory.GetDirectories(studyPath);
            if (allSeriesPaths.Length < 1)
            {
                throw new Exception("No series subdirectories");
            }

            foreach (var s in allSeriesPaths)
            {
                var dcmFiles = Directory.GetFiles(s, "*.dcm");
                if (dcmFiles.Length < 1)
                {
                    throw new Exception("No DCM files inside series path: " + s);
                }
                DicomFile tempdcm = new DicomFile(dcmFiles[0]);
                tempdcm.Load();
                var seriesName = tempdcm.DataSet[DicomTags.SeriesDescription].GetString(0, null);
                var seriesUID  = s.Substring(s.LastIndexOf(Path.DirectorySeparatorChar) + 1);
                if (string.IsNullOrEmpty(seriesName))
                {
                    seriesName = "Unamed_Series";
                }

                APetaPoco.SetConnectionString("cn1");
                var      bm       = APetaPoco.PpRetrieveOne <DbSeries>("Series", "[case_id] = '" + study.case_id + "' AND [series_uid] = '" + seriesUID + "'");
                DbSeries dbseries = null;
                if (bm.Success)
                {
                    dbseries = (DbSeries)bm.Data;
                }

                string outputPath = Path.Combine(dcmPath, "OUTPUT", study.case_id, study.study_uid, seriesUID);
                if (!Directory.Exists(outputPath))
                {
                    Directory.CreateDirectory(outputPath);
                }

                //int fileCount = 0;

                for (int k = 0; k < dcmFiles.Length; k++)
                {
                    DicomFile dcmFile = new DicomFile(dcmFiles[k]);
                    dcmFile.Load();
                    int fileCount   = 0;
                    var windowWidth = dcmFile.DataSet[DicomTags.WindowWidth].ToString();
                    if (!string.IsNullOrEmpty(windowWidth))
                    {
                        var tempSplitString = windowWidth.Split('\\');
                        windowWidth = tempSplitString[0];
                    }
                    var windowCenter = dcmFile.DataSet[DicomTags.WindowCenter].ToString();
                    if (!string.IsNullOrEmpty(windowCenter))
                    {
                        var tempSplitString = windowCenter.Split('\\');
                        windowCenter = tempSplitString[0];
                    }
                    var ww = dcmFile.DataSet[DicomTags.WindowWidth].GetFloat32(0, 0);
                    var wc = dcmFile.DataSet[DicomTags.WindowCenter].GetFloat32(0, 0);

                    if (ww == 0 && !string.IsNullOrEmpty(windowWidth))
                    {
                        if (windowWidth.Contains("."))
                        {
                            var tempSplitString = windowWidth.Split('.');
                            ww = int.Parse(tempSplitString[0]);
                        }
                        else
                        {
                            ww = int.Parse(windowWidth);
                        }
                    }
                    if (wc == 0 && !string.IsNullOrEmpty(windowCenter))
                    {
                        if (windowCenter.Contains("."))
                        {
                            var tempSplitString = windowCenter.Split('.');
                            wc = int.Parse(tempSplitString[0]);
                        }
                        else
                        {
                            wc = int.Parse(windowCenter);
                        }
                    }

                    LocalSopDataSource localds = new LocalSopDataSource(dcmFile);
                    if (!localds.IsImage)
                    {
                        continue;
                    }
                    ImageSop sop        = new ImageSop(localds);
                    int      frameCount = sop.Frames.Count;
                    var      fileName   = dcmFile.DataSet[DicomTags.InstanceNumber].GetInt16(0, 0);
                    if (frameCount > 1)
                    {
                        for (int j = 1; j <= frameCount; j++)
                        {
                            GC.Collect();
                            Frame  f       = sop.Frames[j];
                            var    jpgPath = Path.Combine(outputPath, fileName + "." + j + ".png");
                            Bitmap bmp     = null;
                            if (string.IsNullOrEmpty(windowWidth) || string.IsNullOrEmpty(windowCenter))
                            {
                                bmp = DrawDefaultFrame(f);
                            }
                            else
                            {
                                bmp = DrawLutFrame(f, ww, wc);
                            }
                            if (bmp != null)
                            {
                                if (dbseries != null && dbseries.crop_h != null &&
                                    dbseries.crop_w != null &&
                                    dbseries.crop_x != null &&
                                    dbseries.crop_y != null)
                                {
                                    bmp = Crop(bmp, dbseries.crop_x.Value, dbseries.crop_y.Value, dbseries.crop_w.Value, dbseries.crop_h.Value);
                                }
                                SaveImage(bmp, jpgPath);
                            }
                            fileCount += 1;
                            GC.Collect();
                        }
                    }
                    else
                    {
                        GC.Collect();
                        var    jpgPath = Path.Combine(outputPath, fileName + ".png");
                        Frame  f       = sop.Frames[1];
                        Bitmap bmp     = null;
                        if (string.IsNullOrEmpty(windowWidth) || string.IsNullOrEmpty(windowCenter))
                        {
                            bmp = DrawDefaultFrame(f);
                        }
                        else
                        {
                            bmp = DrawLutFrame(f, ww, wc);
                        }
                        if (bmp != null)
                        {
                            if (dbseries != null && dbseries.crop_h != null &&
                                dbseries.crop_w != null &&
                                dbseries.crop_x != null &&
                                dbseries.crop_y != null)
                            {
                                bmp = Crop(bmp, dbseries.crop_x.Value, dbseries.crop_y.Value, dbseries.crop_w.Value, dbseries.crop_h.Value);
                            }
                            SaveImage(bmp, jpgPath);
                        }
                        fileCount += 1;
                        GC.Collect();
                    }
                }
            }
            LOG.InsertEvent("Successfully converted study from DCM to PNG", "IMG", null, study.case_id, study.study_uid);
            return(true);
        }
        catch (Exception ex)
        {
            string errorString = "Error at :" + System.Reflection.MethodBase.GetCurrentMethod().Name;
            LOG.Write(errorString);
            LOG.Write(ex.Message);
            LOG.InsertEvent(errorString, "IMG", ex.Message, study.case_id, study.study_uid);
            return(false);
        }
    }
コード例 #10
0
ファイル: AUP.cs プロジェクト: plwp/uploader-agent
    public static string CreateCase(DbCase dbcase)
    {
        try
        {
            var ucase = new UploadCase();
            ucase.age  = dbcase.age;
            ucase.body = dbcase.body;
            ucase.diagnostic_certainty_id = dbcase.diagnostic_certainty_id;
            ucase.presentation            = dbcase.presentation;
            ucase.suitable_for_quiz       = dbcase.suitable_for_quiz;
            ucase.system_id = dbcase.system_id;
            ucase.title     = dbcase.title;
            string postData = JsonConvert.SerializeObject(ucase);
            byte[] data     = System.Text.Encoding.UTF8.GetBytes(postData);

            var api  = ACFG.GetSiteApiDetails();
            var user = AOA.GetUserRefreshIfNecessary(dbcase.username, dbcase.case_id);


            string responseFromServer = null;
            try
            {
                WebRequest request = WebRequest.Create(api.cases_url);
                request.Method      = "POST";
                request.ContentType = "application/json";
                request.Headers.Add("Authorization", "Bearer " + user.access_token);

                Stream stream = request.GetRequestStream();
                stream.Write(data, 0, data.Length);
                stream.Close();

                WebResponse            response   = request.GetResponse();
                var                    dataStream = response.GetResponseStream();
                System.IO.StreamReader reader     = new System.IO.StreamReader(dataStream);
                responseFromServer = reader.ReadToEnd();
                if (string.IsNullOrEmpty(responseFromServer))
                {
                    throw new Exception("Unable to get response from server when creating case");
                }
                reader.Close();
                dataStream.Close();
                response.Close();
            }
            catch (WebException ex)
            {
                using (var stream = ex.Response.GetResponseStream())
                    using (var reader = new StreamReader(stream))
                    {
                        string errorResponse = reader.ReadToEnd();
                        LOG.InsertEvent("Unable to create new case on Radiopedia server", "API", errorResponse, dbcase.case_id);
                    }
                return(null);
            }


            var respObj = JsonConvert.DeserializeObject <CaseResponse>(responseFromServer);
            dbcase.r_case_id = respObj.id;
            APetaPoco.SetConnectionString("cn1");
            var bm = APetaPoco.PpUpdate(dbcase);
            if (!bm.Success)
            {
                throw new Exception("Unable to update Case in database");
            }
            LOG.InsertEvent("Successfully created Case on Radiopaedia:\n" + respObj.id, "API", responseFromServer, dbcase.case_id);
            return(respObj.id);
        }
        catch (Exception ex)
        {
            string errorString = "Error at :" + System.Reflection.MethodBase.GetCurrentMethod().Name;
            LOG.Write(errorString);
            LOG.Write(ex.Message);
            LOG.InsertEvent(errorString, "API", ex.Message, dbcase.case_id);
            return(null);
        }
    }
コード例 #11
0
ファイル: AUP.cs プロジェクト: plwp/uploader-agent
    public static string CreateStudy(DbStudy dbstudy, string username, string caseId)
    {
        try
        {
            var ustudy = new StudyUpload();
            ustudy.modality = GetModality(dbstudy.modality);
            ustudy.caption  = dbstudy.caption;
            ustudy.findings = dbstudy.findings;
            ustudy.position = dbstudy.position;
            string postData = JsonConvert.SerializeObject(ustudy);
            byte[] data     = System.Text.Encoding.UTF8.GetBytes(postData);

            string responseFromServer = null;
            try
            {
                var        api     = ACFG.GetSiteApiDetails();
                var        user    = AOA.GetUserRefreshIfNecessary(username, caseId);
                WebRequest request = WebRequest.Create(api.cases_url + caseId + "/studies");
                request.Method      = "POST";
                request.ContentType = "application/json";
                request.Headers.Add("Authorization", "Bearer " + user.access_token);

                Stream stream = request.GetRequestStream();
                stream.Write(data, 0, data.Length);
                stream.Close();

                WebResponse            response   = request.GetResponse();
                var                    dataStream = response.GetResponseStream();
                System.IO.StreamReader reader     = new System.IO.StreamReader(dataStream);
                responseFromServer = reader.ReadToEnd();
                reader.Close();
                dataStream.Close();
                response.Close();
            }
            catch (WebException ex)
            {
                using (var stream = ex.Response.GetResponseStream())
                    using (var reader = new StreamReader(stream))
                    {
                        string errorResponse = reader.ReadToEnd();
                        LOG.InsertEvent("Unable to create new study on Radiopedia server", "API", errorResponse, dbstudy.case_id, dbstudy.study_uid);
                    }
                return(null);
            }
            catch (Exception ex)
            {
                string errorString = "Error at :" + System.Reflection.MethodBase.GetCurrentMethod().Name;
                LOG.Write(errorString);
                LOG.Write(ex.Message);
                LOG.InsertEvent(errorString, "API", ex.Message, dbstudy.case_id, dbstudy.study_uid);
                return(null);
            }

            var respObj = JsonConvert.DeserializeObject <StudyResponse>(responseFromServer);
            dbstudy.r_study_id = respObj.id;
            APetaPoco.SetConnectionString("cn1");
            var bm = APetaPoco.PpUpdate(dbstudy);
            if (!bm.Success)
            {
                throw new Exception("Unable to update Study in database");
            }
            LOG.InsertEvent("Successfully created new study:\n" + respObj.id, "API", responseFromServer, dbstudy.case_id, dbstudy.study_uid);
            return(respObj.id);
        }
        catch (Exception ex)
        {
            string errorString = "Error at :" + System.Reflection.MethodBase.GetCurrentMethod().Name;
            LOG.Write(errorString);
            LOG.Write(ex.Message);
            LOG.InsertEvent(errorString, "API", ex.Message, dbstudy.case_id, dbstudy.study_uid);
            return(null);
        }
        finally { GC.Collect(); }
    }