public void should_remove_units_when_path_is_not_found()
{
_results.AllParameterPaths().Contains("Organism|VenousBlood|Volume").ShouldBeTrue();
_results.AllParameterPaths().Contains("Organism|VenousBlood|Volume [l]").ShouldBeFalse();
_results.ParameterValuesCache.Has("Organism|VenousBlood|Volume [l]").ShouldBeTrue();
_results.ParameterValuesCache.Has("Organism|VenousBlood|Volume").ShouldBeTrue();
}
protected override void Context()
{
base.Context();
_individualPropertiesCache = A.Fake <IndividualValuesCache>();
_patchCache = new PathCacheForSpecs <IParameter>();
var individualParameter = A.Fake <IParameter>();
A.CallTo(() => individualParameter.IsChangedByCreateIndividual).Returns(true);
_patchCache.Add("Path1", individualParameter);
var advancedParameter = A.Fake <IParameter>();
A.CallTo(() => advancedParameter.IsChangedByCreateIndividual).Returns(false);
advancedParameter.CanBeVariedInPopulation = true;
_patchCache.Add("PathAdvanced", advancedParameter);
A.CallTo(() => _individualPropertiesCache.AllParameterPaths()).Returns(new[] { "Path1", "Path2", "PathAdvanced" });
A.CallTo(() => _individualPropertiesCache.ParameterValuesFor("Path1")).Returns(_value1);
A.CallTo(() => _individualPropertiesCache.ParameterValuesFor("Path2")).Returns(_value2);
A.CallTo(() => _individualPropertiesCache.ParameterValuesFor("PathAdvanced")).Returns(_value3);
_populationSimulation = A.Fake <PopulationSimulation>();
_parameterValueCache = A.Fake <ParameterValuesCache>();
A.CallTo(() => _populationSimulation.ParameterValuesCache).Returns(_parameterValueCache);
_mobiPopulation = A.Fake <MoBiPopulation>();
A.CallTo(_simulationFactory).WithReturnType <PopulationSimulation>().Returns(_populationSimulation);
A.CallTo(() => _objectBaseFactory.Create <MoBiPopulation>()).Returns(_mobiPopulation);
A.CallTo(() => _parameterRetriever.ParametersFrom(_populationSimulation)).Returns(_patchCache);
A.CallTo(() => _individualPropertiesCacheImporter.ImportFrom(_populationFile, _patchCache, A <IImportLogger> ._)).Returns(_individualPropertiesCache);
_advancedParameterContainer = new AdvancedParameter();
A.CallTo(() => _advancedParameterFactory.Create(advancedParameter, DistributionTypes.Unknown)).Returns(_advancedParameterContainer);
}
public void should_return_enzyme_ontogenies()
{
var parameterPaths = _result.AllParameterPaths().ToArray();
foreach (var moleculeOntogeny in _populationCharacteristics.MoleculeOntogenies)
{
parameterPaths.ShouldContain($"{moleculeOntogeny.Molecule}|{CoreConstants.Parameters.ONTOGENY_FACTOR}");
parameterPaths.ShouldContain($"{moleculeOntogeny.Molecule}|{CoreConstants.Parameters.ONTOGENY_FACTOR_GI}");
}
}
private void validate(IndividualValuesCache individualValues, IImportLogger logger)
{
foreach (var parameterPath in individualValues.AllParameterPaths().ToList())
{
if (allParametersContains(parameterPath))
{
continue;
}
logger.AddWarning(PKSimConstants.Warning.ParameterWithPathNotFoundInBaseIndividual(parameterPath));
individualValues.Remove(parameterPath);
}
}