/// <summary>
/// Validate that wittyer settings are properly formatted.
/// </summary>
/// <param name="wittyerSettings">Settings to validate.</param>
/// <exception cref="ConstraintException"></exception>
public static void ValidateSettings([NotNull] IWittyerSettings wittyerSettings)
{
foreach (var variantType in wittyerSettings.InputSpecs.Keys)
{
var inputSpec = wittyerSettings.InputSpecs[variantType];
VerifyBins(inputSpec, variantType);
}
void VerifyBins(InputSpec inputSpec, WittyerType variantType)
{
var bins = inputSpec.BinSizes;
if (bins.Select(sizeSkipTuple => sizeSkipTuple.size).Distinct().Count() != bins.Count)
{
throw new ConstraintException($"Duplicate bin sizes for variant type {variantType}.");
}
if (bins.Any() && bins.All(sizeSkipTuple => sizeSkipTuple.skip))
{
throw new ConstraintException($"All bins marked as skipped for variant type {variantType}.");
}
}
}
public static ITry <GeneralStats> GenerateJson(IWittyerSettings settings,
[NotNull] IEnumerable <(ISamplePair sampleName, IWittyerResult query, IWittyerResult truth)> results,
