public TransitionGroupPeakDataConverter(ITransitionGroupPeakData <TData> groupPeakData)
{
_groupPeakData = groupPeakData;
var transPeakData = _groupPeakData.TransitionPeakData;
TransitionPeakData = transPeakData == null ? new List <ITransitionPeakData <ISummaryPeakData> >()
: _groupPeakData.TransitionPeakData.Select(tp =>
new TransitionPeakDataConverter <TData>(tp) as ITransitionPeakData <ISummaryPeakData>).ToList();
Ms1TranstionPeakData = TransitionPeakData.Where(t => t.NodeTran != null && t.NodeTran.IsMs1).ToArray();
Ms2TranstionPeakData = TransitionPeakData.Where(t => t.NodeTran != null && !t.NodeTran.IsMs1).ToArray();
}
private double CalcCountScore(ITransitionGroupPeakData <ISummaryPeakData> transitionGroupPeakData)
{
int count = 0, unforced = 0;
foreach (var peakData in GetIonTypes(transitionGroupPeakData))
{
count++;
if (!peakData.PeakData.IsForcedIntegration)
{
unforced++;
}
}
return(GetPeakCountScore(unforced, count));
}
public MockPeptidePeakData(IList <ITransitionPeakData <TPeak> > transitionPeakData)
{
TransitionGroupPeakData = new[] { new MockTranGroupPeakData <TPeak>(transitionPeakData), };
AnalyteGroupPeakData = TransitionGroupPeakData;
StandardGroupPeakData = new ITransitionGroupPeakData <TPeak> [0];
}
protected override IList <ITransitionPeakData <TData> > GetIonTypes <TData>(ITransitionGroupPeakData <TData> tranPeakDatas)
{
return(MQuestHelpers.GetDefaultIonTypes(new [] { tranPeakDatas }));
}
protected abstract IList <ITransitionPeakData <TData> > GetIonTypes <TData>(ITransitionGroupPeakData <TData> tranGroupPeakDatas);
private IList <ITransitionGroupPeakData <IDetailedPeakData> > GetChangeList(ITransitionGroupPeakData <IDetailedPeakData> peakData)
{
return(peakData.IsStandard ? StandardGroupPeakData : AnalyteGroupPeakData);
}
