/// <summary>
/// Initiates a dynamic connection with a Thermo .raw file. Data can be "streamed" instead of loaded all at once. Use
/// GetOneBasedScanFromDynamicConnection to get data from a particular scan. Use CloseDynamicConnection to close the
/// dynamic connection after all desired data has been retrieved from the dynamic connection.
/// </summary>
private void InitiateDynamicConnection(string filePath)
{
Loaders.LoadElements();
if (dynamicConnection != null)
{
dynamicConnection.Dispose();
}
dynamicConnection = RawFileReaderAdapter.FileFactory(filePath);
if (!File.Exists(filePath))
{
throw new FileNotFoundException();
}
if (!dynamicConnection.IsOpen)
{
throw new MzLibException("Unable to access RAW file!");
}
if (dynamicConnection.IsError)
{
throw new MzLibException("Error opening RAW file!");
}
if (dynamicConnection.InAcquisition)
{
throw new MzLibException("RAW file still being acquired!");
}
dynamicConnection.SelectInstrument(Device.MS, 1);
GetMsOrdersByScanInDynamicConnection();
}
protected override void OnFormClosing(FormClosingEventArgs e)
{
if (ConfirmExit() == false)
{
e.Cancel = true;
}
else
{
RawData.Dispose();
rawFileThreadManager.Dispose();
}
}
/// <summary>
/// Initiates a dynamic connection with a Thermo .raw file. Data can be "streamed" instead of loaded all at once. Use
/// GetOneBasedScanFromDynamicConnection to get data from a particular scan. Use CloseDynamicConnection to close the
/// dynamic connection after all desired data has been retrieved from the dynamic connection.
/// </summary>
protected override void InitiateDynamicConnection()
{
if (!File.Exists(FilePath))
{
throw new FileNotFoundException();
}
if (Path.GetExtension(FilePath).ToUpper() != ".RAW")
{
throw new InvalidDataException();
}
Loaders.LoadElements();
if (dynamicConnection != null)
{
dynamicConnection.Dispose();
}
dynamicConnection = RawFileReaderAdapter.FileFactory(FilePath);
if (!dynamicConnection.IsOpen)
{
throw new MzLibException("Unable to access RAW file!");
}
if (dynamicConnection.IsError)
{
throw new MzLibException("Error opening RAW file!");
}
if (dynamicConnection.InAcquisition)
{
throw new MzLibException("RAW file still being acquired!");
}
dynamicConnection.SelectInstrument(Device.MS, 1);
GetMsOrdersByScanInDynamicConnection();
}
/// <summary>
/// Dispose of the raw file object to handle memory situation
/// </summary>
/// <param name="rawFile"></param>
private void CleanUpRawFile(IRawDataPlus rawFile)
{
rawFile.Dispose();
}
/// <summary>
/// Dispose of the raw file when reading multiple files.
/// </summary>
public void Close()
{
rawFile.Dispose();
}
