protected override void Context()
{
_globalPKAnalysisPresenter = A.Fake <IGlobalPKAnalysisPresenter>();
_concentrationDim = A.Fake <IDimension>();
_timeDim = A.Fake <IDimension>();
_view = A.Fake <IIndividualPKAnalysisView>();
_pkaAnalysisTask = A.Fake <IPKAnalysisTask>();
_simulation = A.Fake <IndividualSimulation>();
_simulations = new List <Simulation>();
_simulations.Add(_simulation);
_exportTask = A.Fake <IPKAnalysisExportTask>();
_individualPKAnalysisToDTOMapper = A.Fake <IIndividualPKAnalysisToPKAnalysisDTOMapper>();
_pkParameterRepository = A.Fake <IPKParameterRepository>();
;
var dataRepository = new DataRepository();
_baseGrid = new BaseGrid("Base", _timeDim);
_col1 = new DataColumn {
DataInfo = new DataInfo(ColumnOrigins.Calculation, AuxiliaryType.Undefined, "mg", DateTime.Now, string.Empty, string.Empty, 5), Dimension = _concentrationDim
};
_col2 = new DataColumn {
Dimension = _concentrationDim, DataInfo = new DataInfo(ColumnOrigins.Calculation, AuxiliaryType.Undefined, "mg", DateTime.Now, string.Empty, string.Empty, 5)
};
_col3 = new DataColumn {
Dimension = _concentrationDim, DataInfo = new DataInfo(ColumnOrigins.Calculation, AuxiliaryType.Undefined, "mg", DateTime.Now, string.Empty, string.Empty, 5)
};
dataRepository.Add(_col1);
dataRepository.Add(_col2);
_simulation.DataRepository = dataRepository;
var curve1 = A.Fake <Curve>();
A.CallTo(() => curve1.yData).Returns(_col1);
A.CallTo(() => curve1.xData).Returns(_baseGrid);
var curve2 = A.Fake <Curve>();
A.CallTo(() => curve2.yData).Returns(_col2);
A.CallTo(() => curve2.xData).Returns(_baseGrid);
var curve3 = A.Fake <Curve>();
A.CallTo(() => curve3.yData).Returns(_col3);
A.CallTo(() => curve3.xData).Returns(_col1);
_curves = new List <Curve> {
curve1, curve2, curve3
};
_allPKAnalysis = new List <Tuple <DataColumn, PKAnalysis> >();
_pkAnalysis1 = createPKAnalysis();
_pkAnalysis2 = createPKAnalysis();
_allPKAnalysis.Add(new Tuple <DataColumn, PKAnalysis>(_col1, _pkAnalysis1));
_allPKAnalysis.Add(new Tuple <DataColumn, PKAnalysis>(_col2, _pkAnalysis2));
_allGlobalPKParameters = new List <IParameter>();
A.CallTo(_pkaAnalysisTask).WithReturnType <IEnumerable <Tuple <DataColumn, PKAnalysis> > >().Returns(_allPKAnalysis);
A.CallTo(_pkaAnalysisTask).WithReturnType <IEnumerable <IParameter> >().Returns(_allGlobalPKParameters);
_presenterSettingsTask = A.Fake <IPresentationSettingsTask>();
sut = new IndividualPKAnalysisPresenter(_view, _pkaAnalysisTask, _exportTask, _globalPKAnalysisPresenter,
_individualPKAnalysisToDTOMapper, _pkParameterRepository, _presenterSettingsTask);
}
public PKAnalysesTask(ILazyLoadTask lazyLoadTask, IPKValuesCalculator pkValuesCalculator, IPKParameterRepository pkParameterRepository, IPKCalculationOptionsFactory pkCalculationOptionsFactory)
{
_lazyLoadTask = lazyLoadTask;
_pkParameterRepository = pkParameterRepository;
_pkCalculationOptionsFactory = pkCalculationOptionsFactory;
_pkValuesCalculator = pkValuesCalculator;
}
public PopulationSimulationPKAnalysesToDataTableConverter(
IDimensionFactory dimensionFactory,
IPKParameterRepository pkParameterRepository)
{
_dimensionFactory = dimensionFactory;
_pkParameterRepository = pkParameterRepository;
}
public PKValuesToPKAnalysisMapper(IParameterFactory parameterFactory, IDimensionRepository dimensionRepository,
IPKParameterRepository pkParameterRepository, IDisplayUnitRetriever displayUnitRetriever)
{
_parameterFactory = parameterFactory;
_dimensionRepository = dimensionRepository;
_pkParameterRepository = pkParameterRepository;
_displayUnitRetriever = displayUnitRetriever;
}
protected override void Context()
{
_lazyLoadTask = A.Fake <ILazyLoadTask>();
_pkValuesCalculator = A.Fake <IPKValuesCalculator>();
_pkParameterRepository = A.Fake <IPKParameterRepository>();
_pkCalculationOptionsFactory = A.Fake <IPKCalculationOptionsFactory>();
sut = new SensitivityAnalysisPKAnalysesTask(_lazyLoadTask, _pkValuesCalculator, _pkParameterRepository, _pkCalculationOptionsFactory);
}
protected override void Context()
{
_parameterFactory = A.Fake <IParameterFactory>();
_dimensionRepository = A.Fake <IDimensionRepository>();
_pkParameterRepository = A.Fake <IPKParameterRepository>();
_displayUnitRetriever = A.Fake <IDisplayUnitRetriever>();
sut = new PKValuesToPKAnalysisMapper(_parameterFactory, _dimensionRepository, _pkParameterRepository, _displayUnitRetriever);
}
protected override void Context()
{
_lazyLoadTask = A.Fake <ILazyLoadTask>();
_pkValuesCalculator = A.Fake <IPKValuesCalculator>();
_pkParameterRepository = A.Fake <IPKParameterRepository>();
_pkCalculationOptionsFactory = A.Fake <IPKCalculationOptionsFactory>();
_entityPathResolver = A.Fake <IEntityPathResolver>();
_pkMapper = A.Fake <IPKValuesToPKAnalysisMapper>();
_dimensionRepository = A.Fake <IDimensionRepository>();
sut = new PKAnalysesTask(_lazyLoadTask, _pkValuesCalculator, _pkParameterRepository, _pkCalculationOptionsFactory, _entityPathResolver, _pkMapper, _dimensionRepository);
_populationSimulation = A.Fake <PopulationSimulation>();
_outputSelections = new OutputSelections();
A.CallTo(() => _populationSimulation.OutputSelections).Returns(_outputSelections);
_allBodyWeights = new List <double>();
_bodyWeight = A.Fake <IParameter>();
var bodyWeightPath = "PATH";
A.CallTo(() => _populationSimulation.BodyWeight).Returns(_bodyWeight);
A.CallTo(() => _entityPathResolver.PathFor(_bodyWeight)).Returns(bodyWeightPath);
A.CallTo(() => _populationSimulation.AllValuesFor(bodyWeightPath)).Returns(_allBodyWeights);
A.CallTo(() => _populationSimulation.NumberOfItems).Returns(2);
_individualResult0 = new IndividualResults {
IndividualId = 0, Time = new QuantityValues {
Values = new[] { 1f, 2f }
}
};
_individualResult0.Add(new QuantityValues {
QuantityPath = _quantityPath1, Values = new[] { 10f, 20f }
});
_individualResult0.Add(new QuantityValues {
QuantityPath = _quantityPath2, Values = new[] { 11f, 21f }
});
_individualResult1 = new IndividualResults {
IndividualId = 1, Time = new QuantityValues {
Values = new[] { 3f, 4f }
}
};
_individualResult1.Add(new QuantityValues {
QuantityPath = _quantityPath1, Values = new[] { 30f, 40f }
});
_individualResult1.Add(new QuantityValues {
QuantityPath = _quantityPath2, Values = new[] { 31f, 41f }
});
_simulationResults = new SimulationResults {
_individualResult0, _individualResult1
};
_populationSimulation.Results = _simulationResults;
_pkParameter1 = new PKParameter {
Mode = PKParameterMode.Always, Name = "Cmax"
};
_pkParameter2 = new PKParameter {
Mode = PKParameterMode.Always, Name = "tMax"
};
A.CallTo(() => _pkParameterRepository.All()).Returns(new[] { _pkParameter1, _pkParameter2 });
}
protected override void Context()
{
_pkCalculator = A.Fake <IPKValuesCalculator>();
_pkMapper = A.Fake <IPKValuesToPKAnalysisMapper>();
_dimensionRepository = A.Fake <IDimensionRepository>();
_pkCalculationOptionsFactory = A.Fake <IPKCalculationOptionsFactory>();
_pkParameterRepository = A.Fake <IPKParameterRepository>();
sut = new PKAnalysisTask(_pkCalculator, _pkMapper, _dimensionRepository, _pkCalculationOptionsFactory, _pkParameterRepository);
}
public void Load(IPKParameterRepository pkParameterMetaDataRepository, string fileName)
{
using (var serializationContext = SerializationTransaction.Create(_dimensionFactory))
{
var serializer = _modellingXmlSerializerRepository.SerializerFor(pkParameterMetaDataRepository);
var xel = XElement.Load(fileName);
serializer.Deserialize(pkParameterMetaDataRepository, xel, serializationContext);
}
}
public PopulationAnalysisFieldFactory(IEntityPathResolver entityPathResolver, IFullPathDisplayResolver fullPathDisplayResolver,
IGenderRepository genderRepository, IColorGenerator colorGenerator, IPKParameterRepository pkParameterRepository)
{
_entityPathResolver = entityPathResolver;
_fullPathDisplayResolver = fullPathDisplayResolver;
_genderRepository = genderRepository;
_colorGenerator = colorGenerator;
_pkParameterRepository = pkParameterRepository;
}
protected override void Context()
{
_view = A.Fake <IPopulationParameterDistributionView>();
_distributionDataCreator = A.Fake <IDistributionDataCreator>();
_representationInfoRepository = A.Fake <IRepresentationInfoRepository>();
_displayUnitRetriever = A.Fake <IDisplayUnitRetriever>();
_pkParameterRepository = A.Fake <IPKParameterRepository>();
sut = new PopulationDistributionPresenter(_view, _distributionDataCreator, _representationInfoRepository, _displayUnitRetriever, _pkParameterRepository);
}
public PopulationAnalysisAvailablePKParametersPresenter(IPopulationAnalysisAvailablePKParametersView view,
IQuantityToQuantitySelectionDTOMapper quantitySelectionDTOMapper, IEntitiesInContainerRetriever entitiesInContainerRetriever, IPKParameterRepository pkParameterRepository)
: base(view)
{
_quantitySelectionDTOMapper = quantitySelectionDTOMapper;
_entitiesInContainerRetriever = entitiesInContainerRetriever;
_pkParameterRepository = pkParameterRepository;
_allPKParameters = new List <QuantityPKParameterDTO>();
}
public PKAnalysisTask(IPKValuesCalculator pkValuesCalculator, IPKValuesToPKAnalysisMapper pkMapper,
IDimensionRepository dimensionRepository, IPKCalculationOptionsFactory pkCalculationOptionsFactory,
IPKParameterRepository pkParameterRepository)
{
_pkValuesCalculator = pkValuesCalculator;
_pkMapper = pkMapper;
_dimensionRepository = dimensionRepository;
_pkCalculationOptionsFactory = pkCalculationOptionsFactory;
_pkParameterRepository = pkParameterRepository;
}
protected PKAnalysisPresenter(TView view, IPKParameterRepository pkParameterRepository, IPresentationSettingsTask presentationSettingsTask)
: base(view)
{
_pkParameterRepository = pkParameterRepository;
_presentationSettingsTask = presentationSettingsTask;
_undefinedPKParameter = new PKSimParameter {
Dimension = Constants.Dimension.NO_DIMENSION
};
_settings = new DefaultPresentationSettings();
}
public PopulationPKAnalysisPresenter(IPopulationPKAnalysisView view, IPKAnalysesTask pkAnalysesTask,
IPKAnalysisExportTask exportTask, IPopulationPKAnalysisToPKAnalysisDTOMapper populationPKAnalysisToDTOMapper,
IPKParameterRepository pkParameterRepository, IPresentationSettingsTask presentationSettingsTask)
: base(view, pkParameterRepository, presentationSettingsTask)
{
_pkAnalysesTask = pkAnalysesTask;
_exportTask = exportTask;
_allAnalyses = new List <PopulationPKAnalysis>();
_populationPKAnalysisToDTOMapper = populationPKAnalysisToDTOMapper;
}
public PopulationDistributionPresenter(IPopulationParameterDistributionView view,
IDistributionDataCreator distributionDataCreator,
IRepresentationInfoRepository representationInfoRepository,
IDisplayUnitRetriever displayUnitRetriever, IPKParameterRepository pkParameterRepository)
: base(view)
{
_distributionDataCreator = distributionDataCreator;
_representationInfoRepository = representationInfoRepository;
_displayUnitRetriever = displayUnitRetriever;
_pkParameterRepository = pkParameterRepository;
}
public SensitivityAnalysisPKParameterAnalysisPresenter(
ISensitivityAnalysisPKParameterAnalysisView view,
IPresentationSettingsTask presentationSettingsTask,
IPKParameterRepository pkParameterRepository,
IApplicationSettings applicationSettings) : base(view)
{
_presentationSettingsTask = presentationSettingsTask;
_pkParameterRepository = pkParameterRepository;
_applicationSettings = applicationSettings;
_nameProperty = ReflectionHelper.PropertyFor <SensitivityAnalysisPKParameterAnalysis, string>(x => x.Name).Name;
}
public PKParameterTask(
IPKParameterRepository pkParameterRepository,
IDimensionTask dimensionTask,
IDimensionFactory dimensionFactory,
IOSPSuiteLogger logger)
{
_pkParameterRepository = pkParameterRepository;
_dimensionTask = dimensionTask;
_dimensionFactory = dimensionFactory;
_logger = logger;
}
protected override void Context()
{
_lazyLoadTask = A.Fake <ILazyLoadTask>();
_pkCalculator = A.Fake <IPKValuesCalculator>();
_pkMapper = A.Fake <IPKValuesToPKAnalysisMapper>();
_dimensionRepository = A.Fake <IDimensionRepository>();
_pkCalculationOptionsFactory = A.Fake <IPKCalculationOptionsFactory>();
_pkParameterRepository = A.Fake <IPKParameterRepository>();
_entityPathResolver = A.Fake <IEntityPathResolver>();
sut = new PKAnalysesTask(_lazyLoadTask, _pkCalculator, _pkParameterRepository, _pkCalculationOptionsFactory, _entityPathResolver, _pkMapper, _dimensionRepository);
}
public IndividualPKAnalysisPresenter(IIndividualPKAnalysisView view, IPKAnalysisTask pkAnalysisTask, IPKAnalysisExportTask exportTask,
IGlobalPKAnalysisPresenter globalPKAnalysisPresenter, IIndividualPKAnalysisToPKAnalysisDTOMapper pKAnalysisToDTOMapper,
IPKParameterRepository pkParameterRepository, IPresentationSettingsTask presentationSettingsTask) : base(view, pkParameterRepository, presentationSettingsTask)
{
_pkAnalysisTask = pkAnalysisTask;
_globalPKAnalysisPresenter = globalPKAnalysisPresenter;
_exportTask = exportTask;
_view.ShowControls = false;
_curveCache = new Cache <DataColumn, Curve>(onMissingKey: x => null);
AddSubPresenters(_globalPKAnalysisPresenter);
_view.AddGlobalPKAnalysisView(_globalPKAnalysisPresenter.View);
_pKAnalysisToDTOMapper = pKAnalysisToDTOMapper;
}
public PKAnalysesTask(ILazyLoadTask lazyLoadTask,
IPKValuesCalculator pkValuesCalculator,
IPKParameterRepository pkParameterRepository,
IPKCalculationOptionsFactory pkCalculationOptionsFactory,
IEntityPathResolver entityPathResolver,
IPKValuesToPKAnalysisMapper pkMapper,
IDimensionRepository dimensionRepository) : base(lazyLoadTask, pkValuesCalculator, pkParameterRepository, pkCalculationOptionsFactory)
{
_lazyLoadTask = lazyLoadTask;
_entityPathResolver = entityPathResolver;
_pkMapper = pkMapper;
_dimensionRepository = dimensionRepository;
_pkValuesCalculator = pkValuesCalculator;
_pkCalculationOptionsFactory = pkCalculationOptionsFactory;
_pkParameterRepository = pkParameterRepository;
}
protected override void Context()
{
_entityPathResolver = A.Fake <IEntityPathResolver>();
_fullPathDisplayResolver = A.Fake <IFullPathDisplayResolver>();
_parameter = A.Fake <IParameter>();
_genderRepository = A.Fake <IGenderRepository>();
_male = new Gender {
DisplayName = "Male"
};
_female = new Gender {
DisplayName = "Female"
};
A.CallTo(() => _genderRepository.Male).Returns(_male);
A.CallTo(() => _genderRepository.Female).Returns(_female);
_colorGenerator = A.Fake <IColorGenerator>();
_pkParameterRepository = A.Fake <IPKParameterRepository>();
sut = new PopulationAnalysisFieldFactory(_entityPathResolver, _fullPathDisplayResolver, _genderRepository, _colorGenerator, _pkParameterRepository);
}
protected override void Context()
{
_pkParameterRepository = A.Fake <IPKParameterRepository>();
_representationInfoRepository = A.Fake <IRepresentationInfoRepository>();
sut = new IndividualPKAnalysisToDataTableMapper(_pkParameterRepository, _representationInfoRepository);
_curves = new List <ICurve>();
var curve1 = A.Fake <ICurve>();
var curve2 = A.Fake <ICurve>();
var dataColumn1 = generateDataColumn();
var dataColumn2 = generateDataColumn();
A.CallTo(() => curve1.yData).Returns(dataColumn1);
A.CallTo(() => curve2.yData).Returns(dataColumn2);
_curves.Add(curve1);
_curves.Add(curve2);
_allPKAnalysis = new List <IndividualPKAnalysis> {
new IndividualPKAnalysis(dataColumn1, PKAnalysisHelperForSpecs.GenerateIndividualPKAnalysis()), new IndividualPKAnalysis(dataColumn2, PKAnalysisHelperForSpecs.GenerateIndividualPKAnalysis())
};
}
protected override void Context()
{
_exportTask = A.Fake <IPKAnalysisExportTask>();
_pkAnalysesTask = A.Fake <IPKAnalysesTask>();
_view = A.Fake <IPopulationPKAnalysisView>();
_populationPKAnalysisToDTOMapper = A.Fake <IPopulationPKAnalysisToPKAnalysisDTOMapper>();
_populationPKAnalysisToDataTableMapper = A.Fake <IPopulationPKAnalysisToDataTableMapper>();
_pkParameterRepository = A.Fake <IPKParameterRepository>();
_presenterSettingsTask = A.Fake <IPresentationSettingsTask>();
sut = new PopulationPKAnalysisPresenter(_view, _pkAnalysesTask, _exportTask, _populationPKAnalysisToDTOMapper, _pkParameterRepository, _presenterSettingsTask);
_populationDataCollector = A.Fake <IPopulationDataCollector>();
_timeProfileChartData = new ChartData <TimeProfileXValue, TimeProfileYValue>(null, null);
var pane = new PaneData <TimeProfileXValue, TimeProfileYValue>(null)
{
Caption = "TOTO"
};
_curve1 = new TimeProfileCurveData {
Caption = "A", Pane = pane
};
_curve2 = new TimeProfileCurveData {
Caption = "B", Pane = pane
};
_pk1 = new PKAnalysis();
_pk2 = new PKAnalysis();
_allPKanalysis = new List <PopulationPKAnalysis>
{
new PopulationPKAnalysis(_curve1, _pk1),
new PopulationPKAnalysis(_curve2, _pk2),
};
A.CallTo(() => _pkAnalysesTask.CalculateFor(_populationDataCollector, _timeProfileChartData)).Returns(_allPKanalysis);
A.CallTo(() => _view.BindTo(A <PKAnalysisDTO> ._)).Invokes(x => _dataTable = x.GetArgument <PKAnalysisDTO>(0).DataTable);
A.CallTo(() => _populationPKAnalysisToDataTableMapper.MapFrom(A <IReadOnlyList <PopulationPKAnalysis> > ._, true)).Returns(_dataTable);
}
protected override void Context()
{
_dimensionFactory = A.Fake <IDimensionFactory>();
_pkParameterRepository = A.Fake <IPKParameterRepository>();
sut = new PopulationSimulationPKAnalysesToDataTableConverter(_dimensionFactory, _pkParameterRepository);
}
public IndividualPKAnalysisToDataTableMapper(IPKParameterRepository pkParameterRepository, IRepresentationInfoRepository representationInfoRepository) : base(pkParameterRepository, representationInfoRepository)
{
}
public SensitivityAnalysisRunResultToDataTableMapper(IQuantityPathToQuantityDisplayPathMapper quantityDisplayPathMapper, IPKParameterRepository pkParameterRepository, IEntityPathResolver entityPathResolver)
{
_quantityDisplayPathMapper = quantityDisplayPathMapper;
_pkParameterRepository = pkParameterRepository;
_entityPathResolver = entityPathResolver;
}
protected override void Context()
{
_pkParameterRepository = A.Fake <IPKParameterRepository>();
_representationInfoRepository = A.Fake <IRepresentationInfoRepository>();
sut = new PopulationPKAnalysisToDataTableMapper(_pkParameterRepository, _representationInfoRepository);
}
public SensitivityAnalysisPKAnalysesTask(ILazyLoadTask lazyLoadTask, IPKValuesCalculator pkValuesCalculator, IPKParameterRepository pkParameterRepository, IPKCalculationOptionsFactory pkCalculationOptionsFactory) : base(lazyLoadTask, pkValuesCalculator, pkParameterRepository, pkCalculationOptionsFactory)
{
}
public PopulationPKAnalysesTask(ILazyLoadTask lazyLoadTask, IPKValuesCalculator pkValuesCalculator, IPKParameterRepository pkParameterRepository,
IPKCalculationOptionsFactory pkCalculationOptionsFactory, IEntityPathResolver entityPathResolver) : base(lazyLoadTask, pkValuesCalculator, pkParameterRepository, pkCalculationOptionsFactory)
{
_lazyLoadTask = lazyLoadTask;
_entityPathResolver = entityPathResolver;
}
