public PopulationPKAnalysesTeXBuilder(IPKAnalysisTask pkAnalysisTask, ITeXBuilderRepository builderRepository,
IPopulationPKAnalysisToDataTableMapper pkAnalysisToDataTableMapper, IPresentationSettingsTask presentationSettingsTask, IDisplayUnitRetriever displayUnitRetriever) : base(presentationSettingsTask, displayUnitRetriever)
{
_pkAnalysisTask = pkAnalysisTask;
_builderRepository = builderRepository;
_pkAnalysisToDataTableMapper = pkAnalysisToDataTableMapper;
}
protected override void Context()
{
_globalPKAnalysisPresenter = A.Fake <IGlobalPKAnalysisPresenter>();
_concentrationDim = A.Fake <IDimension>();
_timeDim = A.Fake <IDimension>();
_view = A.Fake <IIndividualPKAnalysisView>();
_pkaAnalysisTask = A.Fake <IPKAnalysisTask>();
_simulation = A.Fake <IndividualSimulation>();
_simulations = new List <Simulation>();
_simulations.Add(_simulation);
_exportTask = A.Fake <IPKAnalysisExportTask>();
_individualPKAnalysisToDTOMapper = A.Fake <IIndividualPKAnalysisToPKAnalysisDTOMapper>();
_pkParameterRepository = A.Fake <IPKParameterRepository>();
;
var dataRepository = new DataRepository();
_baseGrid = new BaseGrid("Base", _timeDim);
_col1 = new DataColumn {
DataInfo = new DataInfo(ColumnOrigins.Calculation, AuxiliaryType.Undefined, "mg", DateTime.Now, string.Empty, string.Empty, 5), Dimension = _concentrationDim
};
_col2 = new DataColumn {
Dimension = _concentrationDim, DataInfo = new DataInfo(ColumnOrigins.Calculation, AuxiliaryType.Undefined, "mg", DateTime.Now, string.Empty, string.Empty, 5)
};
_col3 = new DataColumn {
Dimension = _concentrationDim, DataInfo = new DataInfo(ColumnOrigins.Calculation, AuxiliaryType.Undefined, "mg", DateTime.Now, string.Empty, string.Empty, 5)
};
dataRepository.Add(_col1);
dataRepository.Add(_col2);
_simulation.DataRepository = dataRepository;
var curve1 = A.Fake <Curve>();
A.CallTo(() => curve1.yData).Returns(_col1);
A.CallTo(() => curve1.xData).Returns(_baseGrid);
var curve2 = A.Fake <Curve>();
A.CallTo(() => curve2.yData).Returns(_col2);
A.CallTo(() => curve2.xData).Returns(_baseGrid);
var curve3 = A.Fake <Curve>();
A.CallTo(() => curve3.yData).Returns(_col3);
A.CallTo(() => curve3.xData).Returns(_col1);
_curves = new List <Curve> {
curve1, curve2, curve3
};
_allPKAnalysis = new List <Tuple <DataColumn, PKAnalysis> >();
_pkAnalysis1 = createPKAnalysis();
_pkAnalysis2 = createPKAnalysis();
_allPKAnalysis.Add(new Tuple <DataColumn, PKAnalysis>(_col1, _pkAnalysis1));
_allPKAnalysis.Add(new Tuple <DataColumn, PKAnalysis>(_col2, _pkAnalysis2));
_allGlobalPKParameters = new List <IParameter>();
A.CallTo(_pkaAnalysisTask).WithReturnType <IEnumerable <Tuple <DataColumn, PKAnalysis> > >().Returns(_allPKAnalysis);
A.CallTo(_pkaAnalysisTask).WithReturnType <IEnumerable <IParameter> >().Returns(_allGlobalPKParameters);
_presenterSettingsTask = A.Fake <IPresentationSettingsTask>();
sut = new IndividualPKAnalysisPresenter(_view, _pkaAnalysisTask, _exportTask, _globalPKAnalysisPresenter,
_individualPKAnalysisToDTOMapper, _pkParameterRepository, _presenterSettingsTask);
}
protected override void Context()
{
_dialogCreator = A.Fake <IDialogCreator>();
_dataRepositoryTask = A.Fake <IDataRepositoryTask>();
_quantityDisplayPathMapper = A.Fake <IQuantityPathToQuantityDisplayPathMapper>();
_pkAnalysisTask = A.Fake <IPKAnalysisTask>();
_globalPKAnalysisMapper = A.Fake <IGlobalPKAnalysisToDataTableMapper>();
sut = new PKAnalysisExportTask(_dialogCreator, _dataRepositoryTask, _quantityDisplayPathMapper, _globalPKAnalysisMapper);
}
public IndividualPKAnalysesTeXBuilder(IGlobalPKAnalysisTask globalPKAnalysisTask,
IPKAnalysisTask pkAnalysisTask, ITeXBuilderRepository builderRepository, IGlobalPKAnalysisToDataTableMapper globalPKAnalysisToDataTableMapper,
IIndividualPKAnalysisToDataTableMapper pkAnalysisToDataTableMapper, IPresentationSettingsTask presentationSettingsTask, IDisplayUnitRetriever displayUnitRetriever) : base(presentationSettingsTask, displayUnitRetriever)
{
_globalPKAnalysisTask = globalPKAnalysisTask;
_pkAnalysisTask = pkAnalysisTask;
_builderRepository = builderRepository;
_globalPKAnalysisToDataTableMapper = globalPKAnalysisToDataTableMapper;
_pkAnalysisToDataTableMapper = pkAnalysisToDataTableMapper;
}
public PopulationPKAnalysisPresenter(IPopulationPKAnalysisView view, IPKAnalysisTask pkAnalysisTask,
IPKAnalysisExportTask exportTask, IPopulationPKAnalysisToPKAnalysisDTOMapper populationPKAnalysisToDTOMapper,
IPKParameterRepository pkParameterRepository, IPresentationSettingsTask presentationSettingsTask)
: base(view, pkParameterRepository, presentationSettingsTask)
{
_pkAnalysisTask = pkAnalysisTask;
_exportTask = exportTask;
_allAnalyses = new List <PopulationPKAnalysis>();
_populationPKAnalysisToDTOMapper = populationPKAnalysisToDTOMapper;
}
public IndividualPKAnalysisPresenter(IIndividualPKAnalysisView view, IPKAnalysisTask pkAnalysisTask, IPKAnalysisExportTask exportTask,
IGlobalPKAnalysisPresenter globalPKAnalysisPresenter, IIndividualPKAnalysisToPKAnalysisDTOMapper pKAnalysisToDTOMapper,
IPKParameterRepository pkParameterRepository, IPresentationSettingsTask presentationSettingsTask) : base(view, pkParameterRepository, presentationSettingsTask)
{
_pkAnalysisTask = pkAnalysisTask;
_globalPKAnalysisPresenter = globalPKAnalysisPresenter;
_exportTask = exportTask;
_view.ShowControls = false;
_curveCache = new Cache <DataColumn, Curve>(onMissingKey: x => null);
AddSubPresenters(_globalPKAnalysisPresenter);
_view.AddGlobalPKAnalysisView(_globalPKAnalysisPresenter.View);
_pKAnalysisToDTOMapper = pKAnalysisToDTOMapper;
}
public GlobalPKAnalysisTask(IParameterFactory parameterFactory, IProtocolToSchemaItemsMapper protocolToSchemaItemsMapper,
IProtocolFactory protocolFactory, IGlobalPKAnalysisRunner globalPKAnalysisRunner, IPKAnalysisTask pkAnalysisTask,
IPKCalculationOptionsFactory pkCalculationOptionsFactory, IVSSCalculator vssCalculator, IInteractionTask interactionTask, ICloner cloner)
{
_parameterFactory = parameterFactory;
_protocolToSchemaItemsMapper = protocolToSchemaItemsMapper;
_protocolFactory = protocolFactory;
_globalPKAnalysisRunner = globalPKAnalysisRunner;
_pkAnalysisTask = pkAnalysisTask;
_pkCalculationOptionsFactory = pkCalculationOptionsFactory;
_vssCalculator = vssCalculator;
_interactionTask = interactionTask;
_cloner = cloner;
}
protected override void Context()
{
_exportTask = A.Fake <IPKAnalysisExportTask>();
_pkAnalysisTask = A.Fake <IPKAnalysisTask>();
_view = A.Fake <IPopulationPKAnalysisView>();
_populationPKAnalysisToDTOMapper = A.Fake <IPopulationPKAnalysisToPKAnalysisDTOMapper>();
_populationPKAnalysisToDataTableMapper = A.Fake <IPopulationPKAnalysisToDataTableMapper>();
_pkParameterRepository = A.Fake <IPKParameterRepository>();
_presenterSettingsTask = A.Fake <IPresentationSettingsTask>();
sut = new PopulationPKAnalysisPresenter(_view, _pkAnalysisTask, _exportTask, _populationPKAnalysisToDTOMapper, _pkParameterRepository, _presenterSettingsTask);
_populationDataCollector = A.Fake <IPopulationDataCollector>();
_timeProfileChartData = new ChartData <TimeProfileXValue, TimeProfileYValue>(null, null);
var pane = new PaneData <TimeProfileXValue, TimeProfileYValue>(null)
{
Caption = "TOTO"
};
_curve1 = new TimeProfileCurveData {
Caption = "A", Pane = pane
};
_curve2 = new TimeProfileCurveData {
Caption = "B", Pane = pane
};
_pk1 = new PKAnalysis();
_pk2 = new PKAnalysis();
_allPKanalysis = new List <PopulationPKAnalysis>
{
new PopulationPKAnalysis(_curve1, _pk1),
new PopulationPKAnalysis(_curve2, _pk2),
};
A.CallTo(() => _pkAnalysisTask.CalculateFor(_populationDataCollector, _timeProfileChartData)).Returns(_allPKanalysis);
A.CallTo(() => _view.BindTo(A <PKAnalysisDTO> ._)).Invokes(x => _dataTable = x.GetArgument <PKAnalysisDTO>(0).DataTable);
A.CallTo(() => _populationPKAnalysisToDataTableMapper.MapFrom(A <IReadOnlyList <PopulationPKAnalysis> > ._, true)).Returns(_dataTable);
}
protected override void Context()
{
_vssCalculator = A.Fake <IVSSCalculator>();
_parameterFactory = A.Fake <IParameterFactory>();
_protocolMapper = A.Fake <IProtocolToSchemaItemsMapper>();
_protocolFactory = A.Fake <IProtocolFactory>();
_globalPKAnalysisRunner = A.Fake <IGlobalPKAnalysisRunner>();
_pkCalculationOptionsFactory = A.Fake <IPKCalculationOptionsFactory>();
_pkAnalysisTask = A.Fake <IPKAnalysisTask>();
_interactionTask = A.Fake <IInteractionTask>();
_cloner = A.Fake <ICloner>();
sut = new GlobalPKAnalysisTask(_parameterFactory, _protocolMapper, _protocolFactory, _globalPKAnalysisRunner,
_pkAnalysisTask, _pkCalculationOptionsFactory, _vssCalculator, _interactionTask, _cloner);
var baseGrid = new BaseGrid("time", A.Fake <IDimension>());
_peripheralVenousBloodPlasma = CalculationColumnFor(baseGrid, CoreConstants.Organ.PeripheralVenousBlood, CoreConstants.Observer.PLASMA_PERIPHERAL_VENOUS_BLOOD, CoreConstants.Observer.PLASMA_PERIPHERAL_VENOUS_BLOOD, _compoundName);
_venousBloodPlasma = CalculationColumnFor(baseGrid, CoreConstants.Organ.VenousBlood, CoreConstants.Compartment.Plasma, CoreConstants.Observer.CONCENTRATION, _compoundName);
_individual = A.Fake <Individual>();
_species = new Species();
A.CallTo(() => _individual.Species).Returns(_species);
_compound = new Compound().WithName(_compoundName);
_compoundProperties = new CompoundProperties {
Compound = _compound
};
_simulationSchemaItems = new List <ISchemaItem>();
_protocol = new SimpleProtocol();
_compoundProperties.ProtocolProperties.Protocol = _protocol;
A.CallTo(() => _protocolMapper.MapFrom(_protocol)).Returns(_simulationSchemaItems);
_simulation = new IndividualSimulation {
Properties = new SimulationProperties()
};
_simulation.Properties.AddCompoundProperties(_compoundProperties);
_simulation.AddUsedBuildingBlock(new UsedBuildingBlock("CompId", PKSimBuildingBlockType.Compound)
{
BuildingBlock = _compound
});
_simulation.AddUsedBuildingBlock(new UsedBuildingBlock("IndividualId", PKSimBuildingBlockType.Individual)
{
BuildingBlock = _individual
});
_simulation.DataRepository = new DataRepository {
_venousBloodPlasma, _peripheralVenousBloodPlasma
};
_venousBloodPK = new PKValues();
_venousBloodPK.AddValue(Constants.PKParameters.Vss, 10);
_venousBloodPK.AddValue(Constants.PKParameters.Vd, 11);
_venousBloodPK.AddValue(Constants.PKParameters.CL, 12);
_venousBloodPK.AddValue(Constants.PKParameters.AUC_inf, 13);
_venousBloodPK.AddValue(Constants.PKParameters.AUC_inf_t1_norm, 14);
_peripheralVenousBloodPK = new PKValues();
_peripheralVenousBloodPK.AddValue(Constants.PKParameters.Vss, 21);
_peripheralVenousBloodPK.AddValue(Constants.PKParameters.Vd, 22);
_peripheralVenousBloodPK.AddValue(Constants.PKParameters.CL, 23);
_peripheralVenousBloodPK.AddValue(Constants.PKParameters.AUC_inf, 24);
_peripheralVenousBloodPK.AddValue(Constants.PKParameters.AUC_inf_t1_norm, 25);
_peripheralVenousBloodPK.AddValue(Constants.PKParameters.C_max, 26);
_peripheralVenousBloodPK.AddValue(Constants.PKParameters.C_max_tLast_tEnd, 27);
A.CallTo(() => _pkAnalysisTask.CalculatePK(_venousBloodPlasma, A <PKCalculationOptions> ._)).Returns(_venousBloodPK);
A.CallTo(() => _pkAnalysisTask.CalculatePK(_peripheralVenousBloodPlasma, A <PKCalculationOptions> ._)).Returns(_peripheralVenousBloodPK);
A.CallTo(() => _parameterFactory.CreateFor(A <string> ._, A <double> ._, A <string> ._, PKSimBuildingBlockType.Simulation))
.ReturnsLazily(s => new PKSimParameter().WithName((string)s.Arguments[0])
.WithDimension(A.Fake <IDimension>())
.WithFormula(new ConstantFormula((double)s.Arguments[1])));
}
