protected override void Context()
{
base.Context();
_templateMoleculeStartValues = new MoleculeStartValuesBuildingBlock();
A.CallTo(_context.Context.ObjectRepository).WithReturnType <bool>().Returns(true);
var moleculeBuildingBlock = new MoleculeBuildingBlock();
A.CallTo(_context.Context).WithReturnType <IMoleculeBuildingBlock>().Returns(moleculeBuildingBlock);
var spatialStructure = new SpatialStructure();
A.CallTo(_context.Context).WithReturnType <ISpatialStructure>().Returns(spatialStructure);
A.CallTo(() => _moleculeStartValuesCreator.CreateFrom(spatialStructure, moleculeBuildingBlock)).Returns(_templateMoleculeStartValues);
_newEndogenousValue = new MoleculeStartValue {
ContainerPath = new ObjectPath("Organism", AppConstants.Organs.ENDOGENOUS_IGG, "Plasma"), Name = "M", IsPresent = true
};
_existingEndogenousValue = new MoleculeStartValue {
ContainerPath = new ObjectPath("Organism", AppConstants.Organs.ENDOGENOUS_IGG, "Cell"), Name = "M", IsPresent = true
};
_existingTemplateEndogenousValue = new MoleculeStartValue {
ContainerPath = new ObjectPath("Organism", AppConstants.Organs.ENDOGENOUS_IGG, "Cell"), Name = "M", IsPresent = true
};
_templateMoleculeStartValues.Add(_newEndogenousValue);
_templateMoleculeStartValues.Add(_existingTemplateEndogenousValue);
_moleculeStartValueBuildingBlock.Add(_existingEndogenousValue);
}
protected override void Context()
{
base.Context();
_buildConfiguration = A.Fake <IMoBiBuildConfiguration>();
_templateStartValuesBuildingBlock = new MoleculeStartValuesBuildingBlock();
_newMoleculeStartValues = new MoleculeStartValuesBuildingBlock();
_buildConfiguration.MoleculeStartValuesInfo = new MoleculeStartValuesBuildingBlockInfo {
BuildingBlock = _templateStartValuesBuildingBlock, TemplateBuildingBlock = _templateStartValuesBuildingBlock
};
A.CallTo(_moleculeStartValuesCreator).WithReturnType <IMoleculeStartValuesBuildingBlock>().Returns(_newMoleculeStartValues);
_newEndogenousValue = new MoleculeStartValue {
ContainerPath = new ObjectPath("Organism", AppConstants.Organs.ENDOGENOUS_IGG, "Plasma"), Name = "M", IsPresent = true
};
_existingEndogenousValue = new MoleculeStartValue {
ContainerPath = new ObjectPath("Organism", AppConstants.Organs.ENDOGENOUS_IGG, "Cell"), Name = "M", IsPresent = true
};
_otherStartValues = new MoleculeStartValue {
ContainerPath = new ObjectPath("Organism", "Liver", "Cell"), Name = "M", IsPresent = true
};
_existingTemplateEndogenousValue = new MoleculeStartValue {
ContainerPath = new ObjectPath("Organism", AppConstants.Organs.ENDOGENOUS_IGG, "Cell"), Name = "M", IsPresent = true
};
_templateStartValuesBuildingBlock.Add(_existingTemplateEndogenousValue);
_newMoleculeStartValues.Add(_newEndogenousValue);
_newMoleculeStartValues.Add(_existingEndogenousValue);
_newMoleculeStartValues.Add(_otherStartValues);
}
protected override void Context()
{
base.Context();
_moleculeStartValuesBuildingBlock = new MoleculeStartValuesBuildingBlock {
Name = _changedName
};
_moleculeStartValue = new MoleculeStartValue();
_path = new ObjectPath(new[] { "A", "B", _changedName });
_moleculeStartValue.Path = _path;
_moleculeStartValuesBuildingBlock.Add(_moleculeStartValue);
_project.AddBuildingBlock(_moleculeStartValuesBuildingBlock);
_moleculeStartValue2 = new MoleculeStartValue();
_path = new ObjectPath(new[] { "A", _changedName, "B" });
_moleculeStartValue2.Path = _path;
_moleculeStartValuesBuildingBlock.Add(_moleculeStartValue2);
}
private void addMoleculesFrom(IMoleculeStartValuesBuildingBlock moleculesStartValuesBuildingBlock, IEntity container, IEnumerable <IMoleculeBuilder> molecules)
{
foreach (var molecule in molecules)
{
var moleculeStartValue = CreateMoleculeStartValue(_objectPathFactory.CreateAbsoluteObjectPath(container), molecule.Name, molecule.Dimension, molecule.DisplayUnit);
setMoleculeStartValue(molecule, moleculeStartValue);
setMoleculeStartValueFormula(molecule.DefaultStartFormula, moleculeStartValue, moleculesStartValuesBuildingBlock);
moleculesStartValuesBuildingBlock.Add(moleculeStartValue);
}
}
protected override void Context()
{
_startValueBuildingBlock = new MoleculeStartValuesBuildingBlock();
_startValue = new MoleculeStartValue {
IsPresent = false
};
_startValueBuildingBlock.Add(_startValue);
_context = A.Fake <IMoBiContext>();
sut = new UpdateMoleculeStartValueIsPresentCommand(_startValueBuildingBlock, _startValue, true);
}
protected override void Context()
{
base.Context();
_context = A.Fake <IMoBiContext>();
_buildingBlock = new MoleculeStartValuesBuildingBlock();
_moleculeStartValue = new MoleculeStartValue();
_path = new ObjectPath("A", "B");
_moleculeStartValue.ContainerPath = _path;
_moleculeStartValue.Name = "Name";
_buildingBlock.Add(_moleculeStartValue);
}
protected override void Context()
{
_fakeDimension = A.Fake <IDimension>();
_context = A.Fake <IMoBiContext>();
_buildingBlock = new MoleculeStartValuesBuildingBlock();
_msv = new MoleculeStartValue {
Path = new ObjectPath("path1"), Dimension = _fakeDimension, StartValue = -1, DisplayUnit = new Unit("Dimensionless", 1.0, 1)
};
_buildingBlock.Add(_msv);
sut = new RemoveMoleculeStartValueFromBuildingBlockCommand(_buildingBlock, _msv.Path);
A.CallTo(() => _context.Get <IStartValuesBuildingBlock <IMoleculeStartValue> >(_buildingBlock.Id)).Returns(_buildingBlock);
}
protected override void Context()
{
base.Context();
_moleculeStartValues = new MoleculeStartValuesBuildingBlock();
_moleculeStartValues.Add(new MoleculeStartValue {
Name = "drug", IsPresent = true
});
_moleculeStartValues.Add(new MoleculeStartValue {
Name = "molecule", IsPresent = true
});
_moleculeStartValues.Add(new MoleculeStartValue {
Name = "moleculeThatDoesNotExist", IsPresent = true
});
_moleculeStartValues.Add(new MoleculeStartValue {
Name = "moleculeThatDoesExistButNotPresent", IsPresent = false
});
_drug = new MoleculeBuilder().WithName("drug");
sut.Add(_drug);
_molecule = new MoleculeBuilder().WithName("molecule");
sut.Add(_molecule);
sut.Add(new MoleculeBuilder().WithName("moleculeThatDoesExistButNotPresent"));
}
protected override void Context()
{
_fakeDimension = A.Fake <IDimension>();
_context = A.Fake <IMoBiContext>();
_buildingBlock = new MoleculeStartValuesBuildingBlock();
var msv = new MoleculeStartValue {
Path = new ObjectPath("path1"), Dimension = _fakeDimension, StartValue = -1, DisplayUnit = new Unit("Dimensionless", 1.0, 1), IsPresent = false
};
_buildingBlock.Add(msv);
_path = msv.Path;
sut = new UpdateMoleculeStartValueInBuildingBlockCommand(_buildingBlock, _path, 1.0, true, 22.0, true);
A.CallTo(() => _context.Get <IMoleculeStartValuesBuildingBlock>(_buildingBlock.Id)).Returns(_buildingBlock);
}