public RandomPopulationFactory(
IObjectBaseFactory objectBaseFactory,
IProgressManager progressManager,
IIndividualModelTask individualModelTask,
ICreateIndividualAlgorithm createIndividualAlgorithm,
IIndividualToIndividualValuesMapper individualValuesMapper,
IContainerTask containerTask,
ICloner cloner,
IDistributedParametersUpdater distributedParametersUpdater,
IReportGenerator reportGenerator,
IMoleculeParameterVariabilityCreator moleculeParameterVariabilityCreator,
IMoleculeOntogenyVariabilityUpdater moleculeOntogenyVariabilityUpdater,
IDiseaseStateImplementationFactory diseaseStateImplementationFactory)
{
_objectBaseFactory = objectBaseFactory;
_progressManager = progressManager;
_individualModelTask = individualModelTask;
_createIndividualAlgorithm = createIndividualAlgorithm;
_individualValuesMapper = individualValuesMapper;
_containerTask = containerTask;
_cloner = cloner;
_distributedParametersUpdater = distributedParametersUpdater;
_reportGenerator = reportGenerator;
_moleculeParameterVariabilityCreator = moleculeParameterVariabilityCreator;
_moleculeOntogenyVariabilityUpdater = moleculeOntogenyVariabilityUpdater;
_diseaseStateImplementationFactory = diseaseStateImplementationFactory;
}
protected override void Context()
{
_createIndvidualAlgorithm = A.Fake <ICreateIndividualAlgorithm>();
_entityBaseFactory = A.Fake <IObjectBaseFactory>();
_individualModelTask = A.Fake <IIndividualModelTask>();
_speciesRepository = A.Fake <ISpeciesRepository>();
_entityValidator = A.Fake <IEntityValidator>();
_reportGenerator = A.Fake <IReportGenerator>();
_genderRepository = A.Fake <IGenderRepository>();
_moleculeOntogenyVariabilityUpdater = A.Fake <IMoleculeOntogenyVariabilityUpdater>();
_diseaseStateImplementationRepository = A.Fake <IDiseaseStateImplementationFactory>();
sut = new IndividualFactory(
_individualModelTask,
_entityBaseFactory,
_createIndvidualAlgorithm,
_speciesRepository,
_entityValidator,
_reportGenerator,
_moleculeOntogenyVariabilityUpdater,
_genderRepository,
_diseaseStateImplementationRepository
);
_age = DomainHelperForSpecs.ConstantParameterWithValue().WithName(CoreConstants.Parameters.AGE);
_gestationalAge = DomainHelperForSpecs.ConstantParameterWithValue().WithName(Constants.Parameters.GESTATIONAL_AGE);
_height = DomainHelperForSpecs.ConstantParameterWithValue().WithName(CoreConstants.Parameters.HEIGHT);
_weight = DomainHelperForSpecs.ConstantParameterWithValue().WithName(CoreConstants.Parameters.WEIGHT);
_bmi = DomainHelperForSpecs.ConstantParameterWithValue().WithName(CoreConstants.Parameters.BMI);
}
public IndividualFactory(IIndividualModelTask individualModelTask, IObjectBaseFactory objectBaseFactory, ICreateIndividualAlgorithm createIndividualAlgorithm,
ISpeciesRepository speciesRepository, IEntityValidator entityValidator, IReportGenerator reportGenerator, IMoleculeOntogenyVariabilityUpdater ontogenyVariabilityUpdater)
{
_individualModelTask = individualModelTask;
_objectBaseFactory = objectBaseFactory;
_createIndividualAlgorithm = createIndividualAlgorithm;
_speciesRepository = speciesRepository;
_entityValidator = entityValidator;
_reportGenerator = reportGenerator;
_ontogenyVariabilityUpdater = ontogenyVariabilityUpdater;
}
protected override void Context()
{
_createIndvidualAlgorithm = A.Fake <ICreateIndividualAlgorithm>();
_entityBaseFactory = A.Fake <IObjectBaseFactory>();
_individualModelTask = A.Fake <IIndividualModelTask>();
_speciesRepository = A.Fake <ISpeciesRepository>();
_entityValidator = A.Fake <IEntityValidator>();
_reportGenerator = A.Fake <IReportGenerator>();
_moleculeOntogenyVariabilityUpdater = A.Fake <IMoleculeOntogenyVariabilityUpdater>();
sut = new IndividualFactory(_individualModelTask, _entityBaseFactory, _createIndvidualAlgorithm, _speciesRepository, _entityValidator, _reportGenerator, _moleculeOntogenyVariabilityUpdater);
}
protected override void Context()
{
_originDataMapper = A.Fake <IIndividualSettingsDTOToOriginDataMapper>();
_individualModelTask = A.Fake <IIndividualModelTask>();
_parameterMapper = A.Fake <IParameterToParameterDTOMapper>();
_originDataTask = A.Fake <IOriginDataTask>();
_subPopulationMapper = A.Fake <ISubPopulationToSubPopulationDTOMapper>();
_calculationMethodMapper = A.Fake <ICalculationMethodToCategoryCalculationMethodDTOMapper>();
_populationRepository = A.Fake <IPopulationRepository>();
sut = new IndividualDefaultValueRetriever(_individualModelTask, _originDataMapper, _parameterMapper,
_originDataTask, _subPopulationMapper, _speciesRepository,
_calculationMethodMapper, _populationRepository);
}
public IndividualDefaultValueRetriever(IIndividualModelTask individualModelTask,
IIndividualSettingsDTOToOriginDataMapper originDataMapper,
IParameterToParameterDTOMapper parameterMapper,
IOriginDataTask originDataTask,
ISubPopulationToSubPopulationDTOMapper subPopulationDTOMapper,
ISpeciesRepository speciesRepository,
ICalculationMethodToCategoryCalculationMethodDTOMapper calculationMethodDTOMapper, IPopulationRepository populationRepository)
{
_individualModelTask = individualModelTask;
_originDataMapper = originDataMapper;
_parameterMapper = parameterMapper;
_originDataTask = originDataTask;
_subPopulationDTOMapper = subPopulationDTOMapper;
_speciesRepository = speciesRepository;
_calculationMethodDTOMapper = calculationMethodDTOMapper;
_populationRepository = populationRepository;
}
public OriginDataMapper(
ParameterMapper parameterMapper,
CalculationMethodCacheMapper calculationMethodCacheMapper,
ValueOriginMapper valueOriginMapper,
IOriginDataTask originDataTask,
IDimensionRepository dimensionRepository,
IIndividualModelTask individualModelTask,
ISpeciesRepository speciesRepository
)
{
_dimensionRepository = dimensionRepository;
_speciesRepository = speciesRepository;
_parameterMapper = parameterMapper;
_originDataTask = originDataTask;
_individualModelTask = individualModelTask;
_calculationMethodCacheMapper = calculationMethodCacheMapper;
_valueOriginMapper = valueOriginMapper;
}
public IndividualDefaultValuesUpdater(
IIndividualModelTask individualModelTask,
IIndividualSettingsDTOToOriginDataMapper originDataMapper,
IParameterToParameterDTOMapper parameterMapper,
IOriginDataTask originDataTask,
ISubPopulationToSubPopulationDTOMapper subPopulationDTOMapper,
ICalculationMethodToCategoryCalculationMethodDTOMapper calculationMethodDTOMapper,
IPopulationRepository populationRepository,
ICloner cloner,
IDiseaseStateRepository diseaseStateRepository)
{
_individualModelTask = individualModelTask;
_originDataMapper = originDataMapper;
_parameterMapper = parameterMapper;
_originDataTask = originDataTask;
_subPopulationDTOMapper = subPopulationDTOMapper;
_calculationMethodDTOMapper = calculationMethodDTOMapper;
_populationRepository = populationRepository;
_cloner = cloner;
_diseaseStateRepository = diseaseStateRepository;
}
protected override void Context()
{
_speciesRepository = A.Fake <ISpeciesRepository>();
_originDataTask = A.Fake <IOriginDataTask>();
_individualModelTask = A.Fake <IIndividualModelTask>();
_male = new Gender().WithName(CoreConstants.Gender.Male);
_female = new Gender().WithName(CoreConstants.Gender.Female);
_human = new Species().WithName(CoreConstants.Species.Human);
_icrp = new SpeciesPopulation {
IsHeightDependent = true, IsAgeDependent = true
}.WithName(CoreConstants.Population.ICRP);
_anotherPop = new SpeciesPopulation().WithName("Another Pop");
_cmForHuman = new CalculationMethod();
_cmForHuman.AddSpecies(_human.Name);
_icrp.AddGender(_male);
_human.AddPopulation(_icrp);
_category = new CalculationMethodCategory();
_category.Add(_cmForHuman);
A.CallTo(() => _speciesRepository.All()).Returns(new[] { _human });
A.CallTo(() => _originDataTask.AllCalculationMethodCategoryFor(_human)).Returns(new[] { _category });
_batchOriginData = new OriginData();
sut = new OriginDataMapper(_speciesRepository, _originDataTask, _individualModelTask);
}
protected override Task Context()
{
_parameterMapper = A.Fake <ParameterMapper>();
_calculationMethodCacheMapper = A.Fake <CalculationMethodCacheMapper>();
_originDataTask = A.Fake <IOriginDataTask>();
_dimensionRepository = A.Fake <IDimensionRepository>();
_individualModelTask = A.Fake <IIndividualModelTask>();
_speciesRepository = A.Fake <ISpeciesRepository>();
_valueOriginMapper = A.Fake <ValueOriginMapper>();
sut = new OriginDataMapper(_parameterMapper, _calculationMethodCacheMapper, _valueOriginMapper, _originDataTask, _dimensionRepository, _individualModelTask, _speciesRepository);
_ageSnapshotParameter = new Parameter {
Value = 1
};
_heightSnapshotParameter = new Parameter {
Value = 2
};
_weightSnapshotParameter = new Parameter {
Value = 3
};
_gestationalAgeSnapshotParameter = new Parameter {
Value = 4
};
_speciesPopulation = new SpeciesPopulation {
Name = "SpeciesPopulation", IsHeightDependent = true, IsAgeDependent = true
};
_gender = new Gender {
Name = "Unknown"
};
_species = new Species {
Name = "Human"
};
_species.AddPopulation(_speciesPopulation);
_anotherPopulation = new SpeciesPopulation {
Name = "Another species population", IsHeightDependent = true, IsAgeDependent = true
};
_speciesPopulation.AddGender(_gender);
_anotherGender = new Gender {
Name = "AnotherGender"
};
A.CallTo(() => _speciesRepository.All()).Returns(new[] { _species });
_originData = new Model.OriginData
{
Age = 35,
AgeUnit = "years",
Height = 17.8,
HeightUnit = "m",
Weight = 73,
WeightUnit = "kg",
Species = _species,
SpeciesPopulation = _speciesPopulation,
Gender = _gender,
GestationalAge = 40
};
A.CallTo(() => _parameterMapper.ParameterFrom(null, A <string> ._, A <IDimension> ._)).Returns(null);
A.CallTo(() => _parameterMapper.ParameterFrom(_originData.Age, A <string> ._, A <IDimension> ._)).Returns(_ageSnapshotParameter);
A.CallTo(() => _parameterMapper.ParameterFrom(_originData.Height, A <string> ._, A <IDimension> ._)).Returns(_heightSnapshotParameter);
A.CallTo(() => _parameterMapper.ParameterFrom(_originData.Weight, A <string> ._, A <IDimension> ._)).Returns(_weightSnapshotParameter);
A.CallTo(() => _parameterMapper.ParameterFrom(_originData.GestationalAge, A <string> ._, A <IDimension> ._)).Returns(_gestationalAgeSnapshotParameter);
_valueOriginSnapshot = new ValueOrigin();
A.CallTo(() => _valueOriginMapper.MapToSnapshot(_originData.ValueOrigin)).Returns(_valueOriginSnapshot);
return(_completed);
}
public OriginDataMapper(ISpeciesRepository speciesRepository, IOriginDataTask originDataTask, IIndividualModelTask individualModelTask)
{
_speciesRepository = speciesRepository;
_originDataTask = originDataTask;
_individualModelTask = individualModelTask;
}
