private IndividualValuesCache withPathsContainingUnitsUpdated(IndividualValuesCache individualValuesCache, PathCache <IParameter> allParameters, IImportLogger logger)
{
// No parameters to check from, return as IS
if (allParameters == null)
{
return(individualValuesCache);
}
//Use TO LIST here because collection might be modified
foreach (var parameterValue in individualValuesCache.AllParameterValues.ToList())
{
var parameterPath = parameterValue.ParameterPath;
if (allParameters.Contains(parameterPath))
{
continue;
}
var pathWithUnitsRemoved = parameterPath.StripUnit();
if (allParameters.Contains(pathWithUnitsRemoved))
{
individualValuesCache.RenamePath(parameterPath, pathWithUnitsRemoved);
parameterValue.ParameterPath = pathWithUnitsRemoved;
continue;
}
logger.AddWarning(Warning.ParameterWithPathNotFoundInBaseIndividual(parameterPath));
individualValuesCache.Remove(parameterPath);
}
return(individualValuesCache);
}
private void validate(IndividualPropertiesCache individualValues, IImportLogger logger)
{
foreach (var parameterPath in individualValues.AllParameterPaths().ToList())
{
if (allParametersContains(parameterPath))
{
continue;
}
logger.AddWarning(PKSimConstants.Warning.ParameterWithPathNotFoundInBaseIndividual(parameterPath));
individualValues.Remove(parameterPath);
}
}
private IndividualPropertiesCache individualPropertiesCacheFrom(string fileFullPath, IImportLogger logger, char delimiter)
{
var individualPropertiesCache = new IndividualPropertiesCache();
using (var reader = new CsvReaderDisposer(fileFullPath, delimiter))
{
var csv = reader.Csv;
var headers = csv.GetFieldHeaders();
if (headers.Contains(Constants.Population.INDIVIDUAL_ID_COLUMN))
{
loadNewCSVFormat(individualPropertiesCache, csv, headers);
}
else
{
loadOldCSVFormat(individualPropertiesCache, csv);
logger.AddWarning(PKSimConstants.Warning.PopulationFileIsUsingOldFormatAndWontBeSupportedInTheNextVersion);
}
}
return(individualPropertiesCache);
}
