public virtual void Run(int scan) { ISpectrum spectrum = spectrumRunner.GetSpectrum(scan); if (spectrum.GetMSnOrder() == 1) { monoRunner.SetMS1Spectrum(spectrum); } else if ((spectrum as ISpectrumMSn).GetActivation() == TypeOfMSActivation.CID) { specProcessor.Process(spectrum); List <IGlycoPeptide> glycoPeptides = null; if (monoRunner.GetMS1Spectrum() == null) { glycoPeptides = precursorMatcher.Match(spectrum); } else { monoRunner.Run(spectrum as ISpectrumMSn); glycoPeptides = precursorMatcher.Match(spectrum, monoRunner.GetMonoMass()); } searchWorker.Search(spectrum, glycoPeptides); resultTable[scan] = searchWorker.GetResult(); } }
public virtual void Run(int scan) { ISpectrum spectrum = spectrumRunner.GetSpectrum(scan); if (spectrum.GetMSnOrder() == 1) { monoRunner.SetMS1Spectrum(spectrum); } else if ((spectrum as ISpectrumMSn).GetActivation() == TypeOfMSActivation.ETD) { specProcessor.Process(spectrum); List <IGlycoPeptide> glycoPeptides = null; if (monoRunner.GetMS1Spectrum() == null) { glycoPeptides = precursorMatcher.Match(spectrum); } else { monoRunner.Run(spectrum as ISpectrumMSn); glycoPeptides = precursorMatcher.Match(spectrum, monoRunner.GetMonoMass()); } searchWorker.Search(spectrum, glycoPeptides); resultTable[scan] = searchWorker.GetResult(); (discover as IGlycoPeptideScoreResultFDR).AddResult(resultTable[scan]); //fdr double mass = (spectrum as ISpectrumMSn).GetParentMZ() + pesudoMZ / (spectrum as ISpectrumMSn).GetParentCharge(); glycoPeptides = precursorMatcher.Match(spectrum, mass); searchWorker.Search(spectrum, glycoPeptides); resultFDRTable[scan] = searchWorker.GetResult(); (discover as IGlycoPeptideScoreResultFDR).AddFDRResult(resultFDRTable[scan]); } }