public ICommand EditMolecule(IndividualMolecule molecule, TSimulationSubject simulationSubject)
{
using (_geneExpressionsDatabasePathManager.ConnectToDatabaseFor(simulationSubject.Species))
using (var presenter = _applicationController.Start <IProteinExpressionsPresenter>())
{
presenter.InitializeSettings(_queryExpressionSettingsMapper.MapFrom(molecule));
presenter.Title = PKSimConstants.UI.EditProteinExpression;
bool proteinEdited = presenter.Start();
if (!proteinEdited)
{
return(new PKSimEmptyCommand());
}
var editedProtein = _executionContext.Clone(molecule);
var queryResults = presenter.GetQueryResults();
//name has changed, needs to ensure unicity
if (!string.Equals(editedProtein.Name, queryResults.ProteinName))
{
editedProtein.Name = _containerTask.CreateUniqueName(simulationSubject, queryResults.ProteinName, true);
}
editedProtein.QueryConfiguration = queryResults.QueryConfiguration;
return(editMolecule(molecule, editedProtein, queryResults, simulationSubject));
}
}
public QueryExpressionResults QueryDatabase(ExpressionProfile expressionProfile, string moleculeName)
{
var(molecule, individual) = expressionProfile;
using (_geneExpressionsDatabasePathManager.ConnectToDatabaseFor(individual.Species))
using (var presenter = _applicationController.Start <IProteinExpressionsPresenter>())
{
presenter.InitializeSettings(_queryExpressionSettingsMapper.MapFrom(molecule, individual, moleculeName));
presenter.Title = PKSimConstants.UI.EditProteinExpression;
var success = presenter.Start();
if (!success)
{
return(null);
}
return(presenter.GetQueryResults());
}
}
