public void TestSerializationEmptyFormulaUsable()
{
Observer x1 = CreateObject <Observer>().WithName("Obasi");
IFormulaUsable x2 = SerializeAndDeserialize(x1);
AssertForSpecs.AreEqualFormulaUsable(x2, x1);
}
protected override IFormulaUsablePath CreateRelativePath(IFormulaUsable formulaUsable, IEntity refObject, IUsingFormula editedObject)
{
if (formulaUsable.IsAtReaction())
{
return(GenerateLocalReference(formulaUsable, editedObject));
}
return(base.CreateRelativePath(formulaUsable, refObject, editedObject));
}
public void TestSerializationNonEmptyFormulaUsable()
{
Observer x1 = CreateObject <Observer>().WithName("Obasi").WithDimension(DimensionLength);
x1.Value = 2.3D;
IFormulaUsable x2 = SerializeAndDeserialize(x1);
AssertForSpecs.AreEqualFormulaUsable(x2, x1);
}
public IFormulaUsablePath CreateAbsoluteFormulaUsablePath(IFormulaUsable entity)
{
var newFormulaUseablePath = new FormulaUsablePath();
addPathEntry(entity, newFormulaUseablePath);
newFormulaUseablePath.Alias = createAliasFrom(entity.Name);
newFormulaUseablePath.Dimension = entity.Dimension;
return(newFormulaUseablePath);
}
protected override void Because()
{
var parameter = new Parameter(3, 1);
parameter.setName("Param");
parameter.setId("p1");
parameter.setValue(5);
_res = sut.CreateParameter(parameter);
}
private IFormulaUsablePath formulaUsablePathReferencing(IFormula formula, IFormulaUsable reference)
{
if (formula == null)
{
return(null);
}
var referenceIndex = formula.ObjectReferences.Select(x => x.Object).IndexOf(reference);
return((referenceIndex >= 0) ? formula.ObjectPaths[referenceIndex] : null);
}
protected IReactionBuilder GetReactionBuilderFor(IFormulaUsable formulaUsable)
{
var parameter = formulaUsable as IParameter;
if (parameter != null && parameter.IsAtReaction())
{
return(parameter.RootContainer as IReactionBuilder);
}
throw new MoBiException($"cant find reaction for parameter{formulaUsable.Name}");
}
protected virtual IFormulaUsablePath CreateRelativePath(IFormulaUsable formulaUsable, IEntity refObject, IUsingFormula editedObject)
{
var path = createRelativePathBase(formulaUsable, refObject);
if (path == null)
{
return(null);
}
path.Replace(Constants.MOLECULE_PROPERTIES, ObjectPathKeywords.MOLECULE);
return(AdjustReferences(formulaUsable, path));
}
private IFormulaUsablePath objectPathFor(IFormulaUsable referencedObject, IFormulaUsablePath originalObjectPath)
{
if (referencedObject == null)
{
return(originalObjectPath);
}
var consolidatedPath = _entityPathResolver.ObjectPathFor(referencedObject);
return(_objectPathFactory.CreateFormulaUsablePathFrom(consolidatedPath)
.WithAlias(originalObjectPath.Alias)
.WithDimension(originalObjectPath.Dimension));
}
private IFormulaUsablePath createRelativePathBase(IFormulaUsable formulaUsable, IEntity refObject)
{
if (refObject == null)
{
return(null);
}
if (formulaUsable.IsAtMolecule() && formulaUsable.RootContainer.Equals(formulaUsable.ParentContainer))
{
return(CreateFormulaUsablePathFrom(new[] { formulaUsable.ParentContainer.Name, formulaUsable.Name }, formulaUsable));
}
return(_objectPathFactory.CreateRelativeFormulaUsablePath(refObject, formulaUsable));
}
protected override IFormulaUsablePath CreateRelativePath(IFormulaUsable formulaUsable, IEntity refObject, IUsingFormula editedObject)
{
if (refObject == null)
{
return(null);
}
var container = formulaUsable.ParentContainer;
var keywordForContainer = getPathKeywordForContainer(container);
if (keywordForContainer.IsNullOrEmpty())
{
//we have a parameter that is not located at Target or Source so we create a normal relative path
return(base.CreateRelativePath(formulaUsable, refObject, editedObject));
}
// We have a target or source parameter in use
return(_objectPathFactory.CreateRelativeFormulaUsablePath(container, formulaUsable)
.AndAddAtFront(keywordForContainer));
}
protected override IFormulaUsablePath CreateRelativePath(IFormulaUsable formulaUseable, IEntity refObject, IUsingFormula editedObject)
{
IFormulaUsablePath path;
if (!formulaUseable.IsAtMolecule())
{
path = base.CreateRelativePath(formulaUseable, refObject, editedObject);
}
else
{
path = GenerateLocalReference(formulaUseable, editedObject);
if (Equals(formulaUseable.ParentContainer, editedObject.ParentContainer))
{
path.Replace(editedObject.ParentContainer.Name, ObjectPathKeywords.MOLECULE);
}
}
return(path);
}
protected IFormulaUsablePath GenerateLocalReference(IFormulaUsable formulaUsable, IUsingFormula editedObject)
{
if (editedObject == null)
{
return(null);
}
IFormulaUsablePath path;
if (formulaUsable.ParentContainer.Equals(editedObject.ParentContainer))
{
path = _objectPathFactory.CreateFormulaUsablePathFrom(ObjectPath.PARENT_CONTAINER, formulaUsable.Name);
}
else
{
path = _objectPathFactory.CreateFormulaUsablePathFrom(ObjectPath.PARENT_CONTAINER, ObjectPath.PARENT_CONTAINER,
formulaUsable.ParentContainer.Name, formulaUsable.Name);
}
path.Dimension = formulaUsable.Dimension;
path.Alias = formulaUsable.Name;
return(path);
}
protected override IFormulaUsablePath CreateRelativePath(IFormulaUsable formulaUsable, IEntity refObject, IUsingFormula editedObject)
{
// relative paths are only used for parameter in the same event group
if (refObject != null && formulaUsable.RootContainer.Equals(refObject.RootContainer))
{
IFormulaUsablePath path;
if (formulaUsable.IsAtMolecule())
{
if (formulaUsable.IsAnImplementationOf <IParameter>())
{
path = _objectPathFactory.CreateAbsoluteFormulaUsablePath(formulaUsable)
.AndAddAtFront((ObjectPath.PARENT_CONTAINER));
}
else
{
//Molecule replace With Amount
path = CreateFormulaUsablePathFrom(new[] { ObjectPath.PARENT_CONTAINER, formulaUsable.Name }, formulaUsable.Name, Constants.Dimension.MOLAR_AMOUNT);
}
correctPath(path, refObject as IContainer);
}
else
{
if (formulaUsable.IsAtReaction())
{
path = CreateFormulaUsablePathFrom(new[] { formulaUsable.Name }, formulaUsable);
correctPath(path, refObject as IContainer);
}
else
{
path = base.CreateRelativePath(formulaUsable, refObject, editedObject);
}
}
return(path);
}
return(CreateAbsolutePath(formulaUsable));
}
protected override void Context()
{
_x = A.Fake <IFormulaUsable>();
A.CallTo(() => _x.Value).Returns(2);
_y = A.Fake <IFormulaUsable>();
A.CallTo(() => _y.Value).Returns(3);
_pathX = A.Fake <IFormulaUsablePath>();
A.CallTo(() => _pathX.Alias).Returns("x");
A.CallTo(() => _pathX.Resolve <IFormulaUsable>(_usingObj)).Returns(_x);
_pathY = A.Fake <IFormulaUsablePath>();
A.CallTo(() => _pathY.Alias).Returns("y");
A.CallTo(() => _pathY.Resolve <IFormulaUsable>(_usingObj)).Returns(_y);
sut = new ExplicitFormula();
sut.AddObjectPath(_pathX);
sut.AddObjectPath(_pathY);
}
public IReadOnlyCollection <IUsingFormula> AllUsingFormulaReferencing(IFormulaUsable reference, IModelCoreSimulation simulation)
{
return(AllUsingFormulaReferencing(reference, simulation.Model));
}
private bool isReferencing(IUsingFormula usingFormula, IFormulaUsable reference)
{
var formula = usingFormula.Formula;
return(formulaReferences(formula, reference) || rhsReferences(usingFormula as IParameter, reference));
}
public IReadOnlyCollection <IUsingFormula> AllUsingFormulaReferencing(IFormulaUsable reference, IModel model)
{
return(model.Root.GetAllChildren <IUsingFormula>(o => isReferencing(o, reference)));
}
private bool formulaReferences(IFormula formula, IFormulaUsable reference)
{
return(formula != null && formula.ObjectReferences.Select(x => x.Object).Contains(reference));
}
private bool rhsReferences(IParameter parameter, IFormulaUsable reference)
{
return(parameter != null && formulaReferences(parameter.RHSFormula, reference));
}
private void renameFormulaPathInFormulas(IReadOnlyCollection <IUsingFormula> referencingFormulas, IFormulaUsable reference, string newName, string oldName)
{
foreach (var usingFormula in referencingFormulas)
{
var objectPath = formulaUsablePathReferencing(usingFormula, reference);
//Reference is always found by construction and this should never happen
if (objectPath == null)
{
return;
}
//The reference is used. The path needs to be updated only if it is a path referencing the old name
if (!objectPath.Contains(oldName))
{
continue;
}
objectPath.ReplaceWith(reference.EntityPath().ToPathArray());
}
}
private void addDynamicVariablesToFormula(ExplicitFormula explicitFormula, StringBuilder stringBuilder, IFormulaUsable formulaUsable, int index0, IObjectPathFactory objectPathFactory)
{
string index1 = $"{index0 + 1}";
string currentVariable = $"{Variable}_{index1}";
//replace current variable in formula string and add reference to the explicit formula
string formulaStringPart = FormulaString.Replace(VariablePattern, currentVariable);
explicitFormula.AddObjectPath(objectPathFactory.CreateAbsoluteFormulaUsablePath(formulaUsable).WithAlias(currentVariable));
foreach (var objectPath in ObjectPaths)
{
if (explicitFormula.ObjectPaths.Contains(objectPath))
{
continue;
}
if (objectPath.Alias.Contains(ITERATION_PATTERN))
{
var referenceVariable = objectPath.TryResolve <IFormulaUsable>(formulaUsable, out var success);
if (!success)
{
throw new UnableToResolvePathException(objectPath, formulaUsable);
}
var referenceAlias = objectPath.Alias.Replace(ITERATION_PATTERN, index1);
formulaStringPart = formulaStringPart.Replace(objectPath.Alias, referenceAlias);
explicitFormula.AddObjectPath(objectPathFactory.CreateAbsoluteFormulaUsablePath(referenceVariable).WithAlias(referenceAlias));
}
else
{
//it is an usable path that is not dynamic. Simply add it
explicitFormula.AddObjectPath(objectPath);
}
}
stringBuilder.Append(formulaStringPart);
}
private string getReactionNameFor(IFormulaUsable formulaUsable)
{
return(GetReactionBuilderFor(formulaUsable).Name);
}
protected IFormulaUsablePath CreateAbsolutePath(IFormulaUsable formulaUsable)
{
return(_objectPathFactory.CreateAbsoluteFormulaUsablePath(formulaUsable));
}
private IFormulaUsablePath formulaUsablePathReferencing(IUsingFormula usingFormula, IFormulaUsable reference)
{
var parameter = usingFormula as IParameter;
return(formulaUsablePathReferencing(usingFormula.Formula, reference) ??
formulaUsablePathReferencing(parameter?.RHSFormula, reference));
}
public IFormulaUsablePath CreateRelativeFormulaUsablePath(IEntity usingObject, IFormulaUsable usedObject)
{
var newFormulaUseablePath = new FormulaUsablePath();
addRelativePathEntries(usingObject, usedObject, newFormulaUseablePath);
newFormulaUseablePath.Alias = createAliasFrom(usedObject.Name);
newFormulaUseablePath.Dimension = usedObject.Dimension;
return(newFormulaUseablePath);
}
protected IFormulaUsablePath CreateFormulaUsablePathFrom(IEnumerable <string> paths, IFormulaUsable formulaUsable)
{
return(CreateFormulaUsablePathFrom(paths, formulaUsable.Name, formulaUsable.Dimension));
}
protected IFormulaUsablePath CreateAlwaysAbsolutePaths(IObjectBase objectBase, IFormulaUsable formulaUsable)
{
if (formulaUsable.IsAtMolecule())
{
return(_objectPathFactory.CreateAbsoluteFormulaUsablePath(formulaUsable));
}
return(CreateFormulaUsablePathFrom(new[] { getReactionNameFor(formulaUsable), objectBase.Name }, formulaUsable));
}
public ObjectReference(IFormulaUsable usedObject, string alias)
{
Object = usedObject;
Alias = alias;
}
