protected override void Context()
{
_view = A.Fake <IExpressionProfileMoleculesView>();
_expressionProfileFactory = A.Fake <IExpressionProfileFactory>();
_applicationController = A.Fake <IApplicationController>();
_mapper = A.Fake <IExpressionProfileToExpressionProfileDTOMapper>();
_enzymePresenter = A.Fake <IIndividualEnzymeExpressionsPresenter <Individual> >();
_expressionProfileUpdater = A.Fake <IExpressionProfileUpdater>();
_expressionProfileProteinDatabaseTask = A.Fake <IExpressionProfileProteinDatabaseTask>();
_moleculeParameterTask = A.Fake <IMoleculeParameterTask>();
sut = new ExpressionProfileMoleculesPresenter(
_view,
_expressionProfileFactory,
_applicationController,
_mapper,
_expressionProfileProteinDatabaseTask,
_expressionProfileUpdater,
_moleculeParameterTask);
sut.InitializeWith(new PKSimMacroCommand());
_expressionProfile = A.Fake <ExpressionProfile>();
_expressionProfileDTO = new ExpressionProfileDTO();
_enzyme = new IndividualEnzyme();
A.CallTo(() => _expressionProfile.Molecule).Returns(_enzyme);
A.CallTo(() => _mapper.MapFrom(_expressionProfile)).Returns(_expressionProfileDTO);
A.CallTo(() => _applicationController.Start <IIndividualEnzymeExpressionsPresenter <Individual> >()).Returns(_enzymePresenter);
}
protected override void Context()
{
_view = A.Fake <ICreateExpressionProfileView>();
_mapper = A.Fake <IExpressionProfileToExpressionProfileDTOMapper>();
_expressionProfileUpdater = A.Fake <IExpressionProfileUpdater>();
_expressionProfileFactory = A.Fake <IExpressionProfileFactory>();
_dialogCreator = A.Fake <IDialogCreator>();
sut = new CloneExpressionProfilePresenter(_view, _mapper, _expressionProfileUpdater, _expressionProfileFactory, _dialogCreator);
}
public CreateExpressionProfilePresenter(
ICreateExpressionProfileView view,
IExpressionProfileFactory expressionProfileFactory,
IExpressionProfileToExpressionProfileDTOMapper expressionProfileDTOMapper,
IMoleculeParameterTask moleculeParameterTask,
IDialogCreator dialogCreator) : base(view)
{
_expressionProfileFactory = expressionProfileFactory;
_expressionProfileDTOMapper = expressionProfileDTOMapper;
_moleculeParameterTask = moleculeParameterTask;
_dialogCreator = dialogCreator;
}
public CloneExpressionProfilePresenter(
ICreateExpressionProfileView view,
IExpressionProfileToExpressionProfileDTOMapper expressionProfileDTOMapper,
IExpressionProfileUpdater expressionProfileUpdater,
IExpressionProfileFactory expressionProfileFactory,
IDialogCreator dialogCreator) : base(view)
{
_expressionProfileDTOMapper = expressionProfileDTOMapper;
_expressionProfileUpdater = expressionProfileUpdater;
_expressionProfileFactory = expressionProfileFactory;
_dialogCreator = dialogCreator;
}
public ExpressionProfileMoleculesPresenter(
IExpressionProfileMoleculesView view,
IExpressionProfileFactory expressionProfileFactory,
IApplicationController applicationController,
IExpressionProfileToExpressionProfileDTOMapper expressionProfileDTOMapper,
IExpressionProfileProteinDatabaseTask expressionProfileProteinDatabaseTask,
IExpressionProfileUpdater expressionProfileUpdater,
IMoleculeParameterTask moleculeParameterTask) : base(view)
{
_expressionProfileFactory = expressionProfileFactory;
_applicationController = applicationController;
_expressionProfileDTOMapper = expressionProfileDTOMapper;
_expressionProfileProteinDatabaseTask = expressionProfileProteinDatabaseTask;
_expressionProfileUpdater = expressionProfileUpdater;
_moleculeParameterTask = moleculeParameterTask;
}
public ExpressionProfileMapper(
ParameterMapper parameterMapper,
ExpressionContainerMapper expressionContainerMapper,
OntogenyMapper ontogenyMapper,
IOntogenyTask ontogenyTask,
IMoleculeExpressionTask <ModelIndividual> moleculeExpressionTask,
IExpressionProfileFactory expressionProfileFactory,
IMoleculeParameterTask moleculeParameterTask
)
{
_parameterMapper = parameterMapper;
_expressionContainerMapper = expressionContainerMapper;
_ontogenyTask = ontogenyTask;
_moleculeExpressionTask = moleculeExpressionTask;
_expressionProfileFactory = expressionProfileFactory;
_moleculeParameterTask = moleculeParameterTask;
_ontogenyMapper = ontogenyMapper;
}
public Converter10to11(
IExpressionProfileFactory expressionProfileFactory,
IExpressionProfileUpdater expressionProfileUpdater,
IPKSimProjectRetriever projectRetriever,
IEventPublisher eventPublisher,
IRegistrationTask registrationTask,
IDefaultIndividualRetriever defaultIndividualRetriever,
ICloner cloner,
IContainerTask containerTask,
Converter100To110 coreConverter
)
{
_expressionProfileFactory = expressionProfileFactory;
_expressionProfileUpdater = expressionProfileUpdater;
_projectRetriever = projectRetriever;
_eventPublisher = eventPublisher;
_registrationTask = registrationTask;
_defaultIndividualRetriever = defaultIndividualRetriever;
_cloner = cloner;
_containerTask = containerTask;
_coreConverter = coreConverter;
}
protected override void Context()
{
_view = A.Fake <ICreateExpressionProfileView>();
_expressionProfileFactory = A.Fake <IExpressionProfileFactory>();
_expressionProfileDTOMapper = A.Fake <IExpressionProfileToExpressionProfileDTOMapper>();
_moleculeParameterTask = A.Fake <IMoleculeParameterTask>();
_dialogCreator = A.Fake <IDialogCreator>();
sut = new CreateExpressionProfilePresenter(_view, _expressionProfileFactory, _expressionProfileDTOMapper, _moleculeParameterTask, _dialogCreator);
_expressionProfile = DomainHelperForSpecs.CreateExpressionProfile <IndividualEnzyme>();
_updatedExpressionProfile = DomainHelperForSpecs.CreateExpressionProfile <IndividualEnzyme>();
_expressionProfileDTO = new ExpressionProfileDTO
{
Species = new Species(),
MoleculeName = "TOTO"
};
A.CallTo(() => _expressionProfileFactory.Create <IndividualEnzyme>()).Returns(_expressionProfile);
A.CallTo(() => _expressionProfileDTOMapper.MapFrom(_expressionProfile)).Returns(_expressionProfileDTO);
A.CallTo(() => _expressionProfileFactory.Create <IndividualEnzyme>(_expressionProfileDTO.Species, _expressionProfileDTO.MoleculeName))
.Returns(_updatedExpressionProfile);
}
protected override Task Context()
{
_parameterMapper = A.Fake <ParameterMapper>();
_expressionContainerMapper = A.Fake <ExpressionContainerMapper>();
_expressionProfileFactory = A.Fake <IExpressionProfileFactory>();
_ontogenyMapper = A.Fake <OntogenyMapper>();
_ontogenyTask = A.Fake <IOntogenyTask>();
_moleculeExpressionTask = A.Fake <IMoleculeExpressionTask <Individual> >();
_moleculeParameterTask = A.Fake <IMoleculeParameterTask>();
sut = new ExpressionProfileMapper(
_parameterMapper,
_expressionContainerMapper,
_ontogenyMapper,
_ontogenyTask,
_moleculeExpressionTask,
_expressionProfileFactory,
_moleculeParameterTask);
_ontogeny = new DatabaseOntogeny
{
Name = "Ontogeny"
};
_expressionProfileEnzyme = DomainHelperForSpecs.CreateExpressionProfile <IndividualEnzyme>("Enzyme");
_expressionProfileEnzyme.Molecule.Ontogeny = _ontogeny;
_expressionProfileEnzyme.Description = "Help";
_expressionProfileTransporter = DomainHelperForSpecs.CreateExpressionProfile <IndividualTransporter>("Transporter");
_expressionProfileTransporter.Description = "Help";
_expressionProfileOtherProtein = DomainHelperForSpecs.CreateExpressionProfile <IndividualOtherProtein>("OtherProtein");
_enzymeGlobalParameter = DomainHelperForSpecs.ConstantParameterWithValue(5, isDefault: true)
.WithName(CoreConstants.Parameters.HALF_LIFE_LIVER);
_enzymeGlobalParameterSnapshot = new Parameter();
A.CallTo(() => _parameterMapper.MapToSnapshot(_enzymeGlobalParameter)).Returns(_enzymeGlobalParameterSnapshot);
_expressionContainer1 = new MoleculeExpressionContainer {
Name = "Exp Container1"
};
_expressionContainer2 = new MoleculeExpressionContainer {
Name = "Exp Container2"
};
_expressionProfileEnzyme.Individual.AddChildren(_expressionContainer1, _expressionContainer2, _enzymeGlobalParameter);
_expressionProfileEnzyme.Molecule.DowncastTo <IndividualEnzyme>().Localization = Localization.Intracellular | Localization.BloodCellsMembrane;
_relativeExpressionParameter1 = DomainHelperForSpecs.ConstantParameterWithValue(0.5).WithName(CoreConstants.Parameters.REL_EXP);
_expressionContainer1.Add(_relativeExpressionParameter1);
_relativeExpressionParameterNotSet = DomainHelperForSpecs.ConstantParameterWithValue(0).WithName(CoreConstants.Parameters.REL_EXP);
_expressionContainer2.Add(_relativeExpressionParameterNotSet);
_relativeExpressionContainerSnapshot1 = new ExpressionContainer();
_relativeExpressionContainerSnapshot2 = new ExpressionContainer();
A.CallTo(() => _expressionContainerMapper.MapToSnapshot(_expressionContainer1)).Returns(_relativeExpressionContainerSnapshot1);
A.CallTo(() => _expressionContainerMapper.MapToSnapshot(_expressionContainer2)).Returns(_relativeExpressionContainerSnapshot2);
_snapshotOntogeny = new Snapshots.Ontogeny();
A.CallTo(() => _ontogenyMapper.MapToSnapshot(_ontogeny)).Returns(_snapshotOntogeny);
_individual = new Individual();
return(_completed);
}
