void ValidateTryGetBasicSymbols(AlphabetsTypes option)
{
IAlphabet alphabetInstance = null;
byte basicSymbol = 0, expectedSymbol1 = 0, expectedSymbol2 = 0;
switch (option)
{
case AlphabetsTypes.Protein:
alphabetInstance = AmbiguousProteinAlphabet.Instance;
basicSymbol = (byte)'Z';
expectedSymbol1 = (byte)'Q';
expectedSymbol2 = (byte)'E';
break;
case AlphabetsTypes.Rna:
alphabetInstance = AmbiguousRnaAlphabet.Instance;
basicSymbol = (byte)'R';
expectedSymbol1 = (byte)'G';
expectedSymbol2 = (byte)'A';
break;
case AlphabetsTypes.Dna:
basicSymbol = (byte)'M';
expectedSymbol1 = (byte)'A';
expectedSymbol2 = (byte)'C';
alphabetInstance = AmbiguousDnaAlphabet.Instance;
break;
}
HashSet <byte> basicSymbols;
Assert.AreEqual(true, alphabetInstance.TryGetBasicSymbols(basicSymbol, out basicSymbols));
Assert.IsTrue(basicSymbols.All(sy => (sy == expectedSymbol1 || sy == expectedSymbol2)));
ApplicationLog.WriteLine(string.Concat(@"Alphabets BVT: Validation of
Try Get Basics symbol for ", option, " completed successfully."));
}