public void PopulateBAMPaths()
{
//Happy Path
var options_1 = new HygeaOptions()
{
BAMPaths = new string[] { TestPaths.LocalTestDataDirectory },
GenomePaths = new[] { _existingGenome },
};
Assert.NotNull(options_1.BAMPaths);
Assert.True(options_1.BAMPaths.Length > 0);
//no bam files found
var options_3 = new HygeaOptions()
{
BAMPaths = new string[] { TestPaths.LocalTestDataDirectory },
GenomePaths = new[] { _existingGenome },
};
var appOptions = new HygeaOptionParser()
{
Options = options_3
};
appOptions.ValidateOptions();
Assert.IsType <ArgumentException>(appOptions.ParsingResult.Exception);
}
private void ExecuteValidationTest(Action <HygeaOptions> testSetup, bool shouldPass)
{
var options = GetBasicOptions();
var parser = new HygeaOptionParser()
{
Options = options
};
testSetup(options);
parser.ValidateOptions();
if (shouldPass)
{
Assert.True(parser.HadSuccess);
}
else
{
Assert.True(parser.ParsingFailed);
}
}