protected override void Context()
{
base.Context();
_popSim1 = new PopulationSimulation {
IsLoaded = true
}.WithId("PopSim1");
_popSim2 = new PopulationSimulation {
IsLoaded = true
}.WithId("PopSim2");
_objectBaseRepository = IoC.Resolve <IWithIdRepository>();
_objectBaseRepository.Register(_popSim1);
_objectBaseRepository.Register(_popSim2);
_populationSimulationComparison = new PopulationSimulationComparison();
_populationSimulationComparison.AddSimulation(_popSim1);
_populationSimulationComparison.AddSimulation(_popSim2);
_populationSimulationComparison.ReferenceSimulation = _popSim1;
_groupingItem = new GroupingItem {
Color = Color.Black, Label = "Reference", Symbol = Symbols.Circle
};
_populationSimulationComparison.ReferenceGroupingItem = _groupingItem;
_populationSimulationComparison.SelectedDistributions.Add(new ParameterDistributionSettings {
ParameterPath = "P1", Settings = new DistributionSettings {
AxisCountMode = AxisCountMode.Percent
}
});
}
protected override void Context()
{
base.Context();
var populationFieldFactory = A.Fake <PopulationAnalysisFieldFactory>();
_covariateField = populationFieldFactory.CreateFor("Gender", _populationDataCollector);
_populationAnalysis.Add(_covariateField);
_genderValues = new string[] { "Male", "Female" };
_covariateField.AddGroupingItem(new GroupingItem {
Label = "Male", Color = PKSimColors.Male, Symbol = Symbols.Circle
});
_covariateField.AddGroupingItem(new GroupingItem {
Label = "Female", Color = PKSimColors.Female, Symbol = Symbols.Diamond
});
var referenceSimulation = A.Fake <PopulationSimulation>().WithName("Sim");
_referenceGroupingItem = new GroupingItem {
Label = "Reference", Color = Color.Black, Symbol = Symbols.Circle
};
_populationDataCollector.ReferenceSimulation = referenceSimulation;
_populationDataCollector.ReferenceGroupingItem = _referenceGroupingItem;
A.CallTo(() => _populationDataCollector.NumberOfItems).Returns(_ageValues.Count * 2);
A.CallTo(() => _populationDataCollector.AllSimulationNames()).Returns(
Enumerable.Repeat(referenceSimulation.Name, _ageValues.Count).Concat(
Enumerable.Repeat("Sim2", _ageValues.Count)).ToArray());
A.CallTo(() => _populationDataCollector.AllValuesFor(_ageField.ParameterPath)).Returns(_ageValues.Concat(_ageValues).ToArray());
A.CallTo(() => _populationDataCollector.AllCovariateValuesFor(_covariateField.Covariate)).Returns(_genderValues.Concat(_genderValues).Concat(_genderValues).ToArray());
}
public GroupingItemDTO From(GroupingItem groupingItem)
{
var dto = new GroupingItemDTO();
dto.UpdateFrom(groupingItem);
return(dto);
}
protected override void Context()
{
sut = new ValueMappingGroupingDefinition("Field");
_groupingItemMale = new GroupingItem {
Label = "Male", Color = Color.Blue, Symbol = Symbols.Circle
};
_groupingItemFemale = new GroupingItem {
Label = "Female", Color = Color.Red, Symbol = Symbols.Diamond
};
}
protected override void Context()
{
base.Context();
var referenceSimulation = A.Fake <PopulationSimulation>().WithName("Sim");
_referenceGroupingItem = new GroupingItem {
Label = "Reference", Color = Color.Black, Symbol = Symbols.Circle
};
_populationDataCollector.ReferenceSimulation = referenceSimulation;
_populationDataCollector.ReferenceGroupingItem = _referenceGroupingItem;
A.CallTo(() => _populationDataCollector.NumberOfItems).Returns(_ageValues.Count);
A.CallTo(() => _populationDataCollector.AllSimulationNames()).Returns(Enumerable.Repeat(referenceSimulation.Name, _ageValues.Count).ToArray());
A.CallTo(() => _populationDataCollector.AllValuesFor(_ageField.ParameterPath)).Returns(_ageValues);
}
public static ObservableCollection<GroupingItem> createGrouping(ObservableCollection<Person> contacts) {
ObservableCollection<GroupingItem> groupingItems = new ObservableCollection<GroupingItem>();
char[] Characters = contacts.Select(o => o.NameToBeDisplayed[0]).Distinct().ToArray().OrderBy(c => c).ToArray();
foreach (char character in Characters) {
GroupingItem groupingItem = new GroupingItem();
groupingItem.Key = character;
groupingItem.AddRange(contacts.Where(o => o.NameToBeDisplayed[0] == character).OrderBy(o => o.NameToBeDisplayed).ToList());
groupingItems.Add(groupingItem);
}
return groupingItems;
}
protected override void Context()
{
base.Context();
_expectedResultForValueMappingGroupingDefinition = initExpectedResultForValueMappingGroupingDefinition();
_valueGroupingDefinition = new ValueMappingGroupingDefinition(_fieldName);
_grouping1 = new GroupingItem {
Label = "Label1"
};
_grouping2 = new GroupingItem {
Label = "Label2"
};
_valueGroupingDefinition.AddValueLabel("1", _grouping1);
_valueGroupingDefinition.AddValueLabel("2", _grouping2);
sut = new PopulationAnalysisGroupingField(_valueGroupingDefinition)
{
Name = _sutName
};
}
protected override Task Context()
{
_dimensionRepository = A.Fake <IDimensionRepository>();
sut = new GroupingDefinitionMapper(_dimensionRepository);
_groupingItem1 = new GroupingItem();
_groupingItem2 = new GroupingItem();
_dimension = DomainHelperForSpecs.TimeDimensionForSpecs();
_unit = _dimension.Unit("h");
A.CallTo(() => _dimensionRepository.DimensionByName(_dimension.Name)).Returns(_dimension);
_valueMappingGrouping = new ValueMappingGroupingDefinition("F1");
_valueMappingGrouping.AddValueLabel("Item1", _groupingItem1);
_valueMappingGrouping.AddValueLabel("Item2", _groupingItem2);
_fixedLimitGrouping = new FixedLimitsGroupingDefinition("F1")
{
DisplayUnit = _unit,
Dimension = _dimension,
};
_fixedLimitGrouping.SetLimits(new[] { 60, 120.0 }.OrderBy(x => x));
_fixedLimitGrouping.AddItem(_groupingItem1);
_fixedLimitGrouping.AddItem(_groupingItem2);
_numberOfBinsGrouping = new NumberOfBinsGroupingDefinition("F1")
{
DisplayUnit = _unit,
Dimension = _dimension,
NumberOfBins = 4,
NamingPattern = "TOTO",
StartColor = Color.Aqua,
EndColor = Color.Red,
Strategy = LabelGenerationStrategies.Numeric
};
_numberOfBinsGrouping.AddItem(_groupingItem1);
_numberOfBinsGrouping.AddItem(_groupingItem2);
return(_completed);
}
protected override Task Context()
{
_groupingDefinitionMapper = A.Fake <GroupingDefinitionMapper>();
_dimension = DomainHelperForSpecs.ConcentrationDimensionForSpecs();
_mergedDimension = DomainHelperForSpecs.TimeDimensionForSpecs();
_unit = _mergedDimension.Unit("h"); // this unit is defined in the merged dimension but not in the field dimension
_dimensionRepository = A.Fake <IDimensionRepository>();
sut = new PopulationAnalysisFieldMapper(_groupingDefinitionMapper, _dimensionRepository);
_groupingItem1 = new GroupingItem();
_parameterField = new PopulationAnalysisParameterField
{
Name = "P",
ParameterPath = "A|B",
Scaling = Scalings.Linear,
Dimension = _dimension,
DisplayUnit = _unit
};
_pkParameterField = new PopulationAnalysisPKParameterField
{
Name = "PK",
Dimension = _dimension,
DisplayUnit = _unit,
PKParameter = "AUC",
QuantityPath = "A|B|C",
QuantityType = QuantityType.Observer | QuantityType.Drug
};
_outputField = new PopulationAnalysisOutputField
{
Name = "Output",
Dimension = _dimension,
DisplayUnit = _unit,
QuantityType = QuantityType.BaseGrid,
QuantityPath = "A|B|C",
Color = Color.AntiqueWhite
};
_groupingDefinition = new FixedLimitsGroupingDefinition("AA");
_groupingField = new PopulationAnalysisGroupingField(_groupingDefinition)
{
Name = "Grouping",
};
_covariateField = new PopulationAnalysisCovariateField
{
Name = "Gender",
Covariate = "Gender",
};
_covariateField.AddGroupingItem(_groupingItem1);
_snapshotGroupingDefinition = new Snapshots.GroupingDefinition();
A.CallTo(() => _groupingDefinitionMapper.MapToSnapshot(_groupingDefinition)).Returns(_snapshotGroupingDefinition);
A.CallTo(() => _dimensionRepository.DimensionByName(_dimension.Name)).Returns(_dimension);
A.CallTo(() => _dimensionRepository.MergedDimensionFor(A <INumericValueField> ._)).Returns(_mergedDimension);
return(_completed);
}
private void updateExpressionWithSimulationName(DataColumn column, PopulationSimulation referenceSimulation, GroupingItem referenceGroupingItem)
{
column.Expression = getReferenceExpression(
referenceSimulation.Name,
referenceGroupingItem.Label,
column.Expression);
}
private static void storeReferenceGroupingItemOn(PopulationAnalysisDerivedField derivedField, GroupingItem referenceGroupingItem)
{
var groupingField = derivedField as PopulationAnalysisGroupingField;
if (groupingField == null)
{
return;
}
groupingField.ReferenceGroupingItem = referenceGroupingItem;
}
public virtual void UpdateFrom(GroupingItem groupingItem)
{
Color = groupingItem.Color;
Label = groupingItem.Label;
Symbol = groupingItem.Symbol;
}
