public IContainer MapFrom(FlatContainerId flatContainerId)
{
var organ = MapCommonPropertiesFrom(flatContainerId);
organ.OrganType = organTypeFromName(organ.Name);
return(organ);
}
private ISchemaItem mapFrom(FlatSchemaItem flatSchemaItem)
{
var schemaItem = new SchemaItem();
schemaItem.Name = flatSchemaItem.Name;
schemaItem.ApplicationType = ApplicationTypes.ByName(flatSchemaItem.ApplicationType);
// temporarily create parent container hierarchy of the
//schema item container in order to retrieve parameters from the DB
FlatContainerId flatContainer = flatSchemaItem;
IContainer container = schemaItem;
while (_flatContainerRepo.ParentContainerFrom(flatContainer.Id) != null)
{
var flatParentContainer = _flatContainerRepo.ParentContainerFrom(flatContainer.Id);
container.ParentContainer = new Container {
Name = flatParentContainer.Name
};
container = container.ParentContainer;
flatContainer = flatParentContainer;
}
// now parameters can be added
_parameterContainerTask.AddSchemaItemParametersTo(schemaItem);
return(schemaItem);
}
public IContainer MapFrom(FlatContainerId flatContainerId)
{
var compartment = MapCommonPropertiesFrom(flatContainerId);
compartment.Visible = FlatContainer.Visible;
return(compartment);
}
//for the moment, map neighborhoods as compartments
public IContainer MapFrom(FlatContainerId flatContainerId)
{
var neighborhood = MapCommonPropertiesFrom(flatContainerId);
neighborhood.Visible = FlatContainer.Visible;
return(neighborhood);
}
public IContainer MapFrom(FlatContainerId flatContainerId)
{
var container = MapCommonPropertiesFrom(flatContainerId);
if (string.Equals(container.Name, Constants.MOLECULE_PROPERTIES))
{
container.ContainerType = ContainerType.Molecule;
}
return(container);
}
public T MapCommonPropertiesFrom(FlatContainerId flatContainerId)
{
FlatContainer = _flatContainerRepository.ContainerFrom(flatContainerId.Id);
var container = _objectBaseFactory.Create <T>().WithName(FlatContainer.Name);
addTagsToContainer(container, flatContainerId.Id);
container.Mode = FlatContainer.IsLogical ? ContainerMode.Logical : ContainerMode.Physical;
return(container);
}
public IContainer MapFrom(FlatContainerId flatContainerId)
{
var containerType = _containerTypeMapper.MapFrom(flatContainerId.Type);
foreach (var containerMapper in _allMappers)
{
if (containerMapper.IsSatisfiedBy(containerType))
{
return(containerMapper.MapFrom(flatContainerId));
}
}
throw new ArgumentException(PKSimConstants.Error.CannotCreateContainerOfType(containerType.ToString()));
}
public IContainer MapFrom(FlatContainerId flatContainerId)
{
return(MapFrom(_flatContainerRepository.ContainerFrom(flatContainerId.Id)));
}
public IContainer MapFrom(FlatContainerId flatContainerId)
{
var eventGroupBuilder = MapCommonPropertiesFrom(flatContainerId);
return(eventGroupBuilder);
}
public IContainer MapFrom(FlatContainerId flatContainerId)
{
var organism = base.MapCommonPropertiesFrom(flatContainerId);
return(organism);
}
