protected override void Context()
{
sut = new PopulationAnalysisFlatTableCreator();
_populationDataCollector = A.Fake <PopulationSimulationComparison>();
_populationAnalysis = new PopulationPivotAnalysis();
_ageField = new PopulationAnalysisParameterField {
ParameterPath = "Path", Name = "Age"
};
_populationAnalysis.Add(_ageField);
//add derived field age class
var groupingDefinition = new FixedLimitsGroupingDefinition("Age");
groupingDefinition.SetLimits(new[] { 14d }.OrderBy(x => x));
groupingDefinition.AddItems(new[]
{
new GroupingItem {
Label = "Children", Color = Color.Blue
},
new GroupingItem {
Label = "Adults", Color = Color.Red
}
});
_ageClassField = new PopulationAnalysisGroupingField(groupingDefinition)
{
Name = "AgeClass"
};
_populationAnalysis.Add(_ageClassField);
_ageValues = new List <double> {
8d, 14d, 21d
};
_ageClassValues = new[] { "Children", "Adults", "Adults" };
}
protected override void Context()
{
_pivotAnalysis = new PopulationPivotAnalysis();
_pivotAnalysis.Add(_genderField);
_pivotAnalysis.Add(_raceField);
_pivotAnalysis.Add(_bmiField);
_pivotAnalysis.Add(_cmaxField);
var grouping = new FixedLimitsGroupingDefinition(_bmiField.Name);
grouping.SetLimits(new[] { 25d }.OrderBy(x => x));
grouping.AddItems(PopulationAnalysisHelperForSpecs.BMIGroups);
_bmiClass = new PopulationAnalysisGroupingField(grouping)
{
Name = "BMI class"
};
_pivotAnalysis.Add(_bmiClass);
_dimensionRepository = A.Fake <IDimensionRepository>();
_pivotResultCreator = A.Fake <IPivotResultCreator>();
var userSettings = A.Fake <ICoreUserSettings>();
userSettings.NumberOfIndividualsPerBin = 1;
userSettings.NumberOfBins = 2;
_binIntervalsCreator = new BinIntervalsCreator(userSettings);
sut = new RangeChartDataCreator(_dimensionRepository, _pivotResultCreator, _binIntervalsCreator);
}
protected override void Context()
{
_pivotAnalysis = new PopulationBoxWhiskerAnalysis();
_aggregate = AggregationFunctions.BoxWhisker90Aggregation;
_pivotAnalysis.Add(_genderField);
_pivotAnalysis.Add(_raceField);
_pivotAnalysis.Add(_bmiField);
_pivotAnalysis.Add(_cmaxField);
var grouping = new FixedLimitsGroupingDefinition(_bmiField.Name);
grouping.SetLimits(new[] { 25d }.OrderBy(x => x));
grouping.AddItems(PopulationAnalysisHelperForSpecs.BMIGroups);
_bmiClass = new PopulationAnalysisGroupingField(grouping)
{
Name = "BMI class"
};
_pivotAnalysis.Add(_bmiClass);
_pivotAnalysis.SetPosition(_genderField, PivotArea.RowArea, 0);
_pivotAnalysis.SetPosition(_raceField, PivotArea.RowArea, 1);
_pivotAnalysis.SetPosition(_bmiClass, PivotArea.ColumnArea, 0);
_pivotAnalysis.SetPosition(_cmaxField, PivotArea.DataArea, 0);
_dimensionRepository = A.Fake <IDimensionRepository>();
_pivotResultCreator = A.Fake <IPivotResultCreator>();
sut = new BoxWhiskerChartDataCreator(_dimensionRepository, _pivotResultCreator);
}
protected override void Context()
{
_populationDataCollector = A.Fake <IPopulationDataCollector>();
_populationAnalysis = A.Fake <PopulationAnalysis>();
A.CallTo(() => _populationDataCollector.NumberOfItems).Returns(100);
_numericField = A.Fake <PopulationAnalysisNumericField>();
A.CallTo(() => _populationAnalysis.FieldByName(_fieldName)).Returns(_numericField);
_fixedLimitsGroupingDefinition = new FixedLimitsGroupingDefinition(_fieldName);
_fixedLimitsGroupingDefinition.AddItems(PopulationAnalysisHelperForSpecs.AgeGroups);
_fixedLimitsGroupingDefinition.SetLimits((new[] { 14D, 18D }).OrderBy(x => x));
_dt = createData();
A.CallTo(() => _numericField.GetValues(_populationDataCollector)).Returns(_dt.AllValuesInColumn <double>(_fieldName).ToList());
sut = new PopulationAnalysisGroupingField(_fixedLimitsGroupingDefinition)
{
Name = _sutName
};
}
protected override void Context()
{
_pivotAnalysis = new PopulationPivotAnalysis();
_pivotAnalysis.Add(_genderField);
_pivotAnalysis.Add(_raceField);
_pivotAnalysis.Add(_bmiField);
_pivotAnalysis.Add(_cmaxField);
var grouping = new FixedLimitsGroupingDefinition(_bmiField.Name);
grouping.SetLimits(new[] { 25d }.OrderBy(x => x));
grouping.AddItems(PopulationAnalysisHelperForSpecs.BMIGroups);
_bmiClass = new PopulationAnalysisGroupingField(grouping)
{
Name = "BMI class"
};
_pivotAnalysis.Add(_bmiClass);
_dimensionRepository = A.Fake <IDimensionRepository>();
_pivotResultCreator = A.Fake <IPivotResultCreator>();
sut = new ScatterChartDataCreator(_dimensionRepository, _pivotResultCreator);
}
public void UpdateGroupingDefinition()
{
_groupingDefinition.Items.Clear();
_groupingDefinition.SetLimits(calculateLimits().OrderBy(x => x));
_groupingDefinition.AddItems(_fixedLimitDTOs.Select(x => x.ToGroupingItem()));
}
public override void GlobalContext()
{
base.GlobalContext();
_populationAnalysis = new PopulationPivotAnalysis();
_pkParameterField = new PopulationAnalysisPKParameterField().WithName("PKParam");
_pkParameterField.PKParameter = "AUC";
_pkParameterField.QuantityPath = "A|B|C";
_pkParameterField.QuantityType = QuantityType.Drug;
_pkParameterField.Dimension = _dimensionRepository.MassConcentration;
_parameterField = new PopulationAnalysisParameterField().WithName("Param");
_parameterField.ParameterPath = "A|B|C|D";
_parameterField.Dimension = _dimensionRepository.Auc;
_outputField = new PopulationAnalysisOutputField().WithName("Output");
_outputField.QuantityPath = "A|B|C";
_outputField.Dimension = _dimensionRepository.Auc;
_outputField.Color = Color.Aquamarine;
_genderField = new PopulationAnalysisCovariateField {
Covariate = "Gender"
}.WithName("Gender");
var numberOfBinsGroupingDefinition = new NumberOfBinsGroupingDefinition(_parameterField.Name)
{
NumberOfBins = 2
};
numberOfBinsGroupingDefinition.NamingPattern = "AA";
numberOfBinsGroupingDefinition.StartColor = Color.AliceBlue;
numberOfBinsGroupingDefinition.EndColor = Color.RoyalBlue;
numberOfBinsGroupingDefinition.Strategy = LabelGenerationStrategies.Roman;
numberOfBinsGroupingDefinition.AddItems(PopulationAnalysisHelperForSpecs.BMIGroups);
_numberOfBinsDerivedField = new PopulationAnalysisGroupingField(numberOfBinsGroupingDefinition).WithName("NumberOfBins");
var fixedLimitsGroupingDefinition = new FixedLimitsGroupingDefinition(_pkParameterField.Name);
fixedLimitsGroupingDefinition.AddItems(PopulationAnalysisHelperForSpecs.AgeGroups);
_fixedLimitsGroupingDefinitionField = new PopulationAnalysisGroupingField(fixedLimitsGroupingDefinition)
.WithName("FixedLimits");
fixedLimitsGroupingDefinition.SetLimits(new[] { 1d, 2d }.OrderBy(x => x));
_derivedFieldWithFixedExpression = new PopulationAnalysisExpressionField("A+B")
.WithName("FixedExpression");
var valueMappingGroupingDefinition = new ValueMappingGroupingDefinition(_genderField.Name);
valueMappingGroupingDefinition.AddValueLabel("Male", PopulationAnalysisHelperForSpecs.GroupingItemMale);
valueMappingGroupingDefinition.AddValueLabel("Female", PopulationAnalysisHelperForSpecs.GroupingItemFemale);
var valueMappingGroupingDefinitionField = new PopulationAnalysisGroupingField(valueMappingGroupingDefinition).WithName("ValueMapping");
_populationAnalysis.Add(_pkParameterField);
_populationAnalysis.Add(_parameterField);
_populationAnalysis.Add(_genderField);
_populationAnalysis.Add(_numberOfBinsDerivedField);
_populationAnalysis.Add(_fixedLimitsGroupingDefinitionField);
_populationAnalysis.Add(_derivedFieldWithFixedExpression);
_populationAnalysis.Add(valueMappingGroupingDefinitionField);
_populationAnalysis.Add(_outputField);
}
