//public class RunMetadata
//{
// public string DataFileName = " "; // Input data file name
// public string DataLabelsFileName = ""; // File with application specific labels for this data
// public string ReducedVectorOutputFileName = ""; // File in ResultDirectoryName holding ReducedVector Output
// public string ClusterDirectory = ""; // Directory to find Cluster Output
// public int DataPoints = 0; // Number of Original Data Points
// public int ProcessingOption = 0; // Control Requested Processing
// public int DistanceProcessingOption = 0; // Control Input data Processing ( = 2 SQUARE Input Values)
// public int InitializationOption = 0; // Control Initialization =0 None =1 Old Model =2 New File Type
// public string InitializationFileName = ""; // File
// public bool write2Das3D = true; // for 2D MDS write output for 3D viewer
// public int LocalVectorDimension = 3; // Final MDS dimension (2 or 3 expected)
// public string selectedvariedpoints = ""; // List of varied points specified by point number or cluster number
// public string VariedPointCriterion = "all"; // If "all" or "rest" all the non-fixed points varied; if "allinfile" choose all in file and ignore selectedvariedpoints property
// // if "originalpoint" select by Original Point; = "family1", "family2", "cluster", "group" select by this division
// public string selectedvariedpointfile = ""; // File containing mapping of groups to original values
// public string selectedfixedpoints = ""; // List of fixed points specified by point number or group number
// public string FixedPointCriterion = "none"; // If "none" there are no fixed points; if "allinfile" choose all in file and ignore selectedfixedpoints property
// // if "originalpoint" select by Original Point; = "family1", "family2", "cluster", "group" select by this division
// public string selectedfixedpointfile = ""; // File containing coordinates of fixed points
// public int RotationOption = 0; // Control Rotation
// public string RotationLabelsFileName = ""; // File with application specific labels for data to be rotated
// public int Chisqnorm = 0; // Method of Normalizing Chisq
// public int DistanceFormula = 0; // Method of Calculating Distance
// public int FullSecondDerivativeOption = 0; // Use Full second Derivative Calculation if > 0
// public double MinimumDistance = -0.01; // Minimum Distance for Chisq Normalization
// public double FunctionErrorCalcMultiplier = 10.0; // Multiplicative Constant for Function (square this for Chisq) Error Calculation
// public double ChisqPrintConstant = 1.0; // Multiplicative Constant for Chisq Printing
// public int maxit = 60; // Maximum Number of Manxcat Iterations
// public int nbadgo = 6; // Limit on Iterations with no progress
// public double ChisqChangePerPoint = 0.001; // Stop when this is Chisq change per point
// public double FletcherRho = 0.25; // Fletcher's parameter rho
// public double FletcherSigma = 0.75; // Fletcher's Parameter sigma
// public double Omega = 1.25; // Parameter Omega deciding if to do Linear Search if OmegaOption = 1
// public int OmegaOption = 0; // If nonzero do linear searches if promising
// public double QHighInitialFactor = 0.01; // Initial call uses this fraction of Qhigh for Q (added 2009)
// public double QgoodReductionFactor = 0.5; // Set to zero to make Q = 0. for good solutions
// public double addonforQcomputation = 2.0; // Add this to make Power Method Safer
// public double extraprecision = 0.05; // Extra precision for Qlow
// public int QLimitscalculationInterval = 1; // recalculate Qhigh Qlow Trace and Norm after this number of iterations
// public int InitialSteepestDescents = 0; // Start minimization with this number of Steepest Descent Iterations
// public double TimeCutmillisec = -1.0; // if positive, Stop when time used in milliseconds greater than timmax
// public bool derivtest = false; // If true, do a derivative
// public double CGResidualLimit = 0.00001; // Stop when Norm of Residual is less than this
// public int PowerIterationLimit = 200; // Limit on Power Iterations
// public double eigenvaluechange = 0.001; // convergence test in power method for eigenvalues
// public double eigenvectorchange = 0.001; // convergence test in power method for eigenvector
// public string TimingOutputFileName = " "; // Timing Output file name
// public string BaseResultDirectoryName = ""; // Base Directory holding all Runs
// public string ResultDirectoryExtension = ""; //
// public string ControlDirectoryName = ""; // Directory holding Control Information for this RunSet
// public string RunSetLabel = ""; // Label for RunSet
// public int RunNumber = 0; // Unique number of run
// public string pattern = ""; // Parallel Pattern
// public int ThreadCount = 1; // Number of Threads
// public int NodeCount = 1; // Number of Nodes
// public int MPIperNodeCount = 1; // Number of MPI Processes per Node
// public int MPIIOStrategy = 0; // Strategy for I/O in MPI
// public int HistogramBinCount = 100; // Bin Count for Histograms
// public string Comment = ""; // User Comment
// public string Extradata1 = ""; // Use in special ways
// public string Extradata2 = ""; // Use in special ways
// public string Extradata3 = ""; // Use in special ways
// public string Extradata4 = ""; // Use in special ways
// public int ExtraOption1 = 0; // use in various ways
// public int DebugPrintOption = 1; // Control Debug Printing (= 0 None, = 1 Full, ==2 Summary)
// public bool ConsoleDebugOutput = false; // If true send debug output to Console
// public static void Membercopy(ref RunMetadata One, ref RunMetadata Two)
// {
// Two = (Manxcat.RunMetadata)One.MemberwiseClone();
// return;
// }
//}
// Write Control data into a file
//public static void WriteControl_Cluster(string ControlFileName, ref RunMetadata DataforthisRun)
//{
// try
// {
// StreamWriter FileToWrite = null;
// if (!string.IsNullOrEmpty(ControlFileName))
// {
// FileToWrite = new StreamWriter(ControlFileName, false, Encoding.UTF8); // Overwrite
// }
// if (FileToWrite != null)
// {
// FileToWrite.WriteLine(String.Format("DataFileName:{0}", DataforthisRun.DataFileName));
// FileToWrite.WriteLine(String.Format("DataLabelsFileName:{0}", DataforthisRun.DataLabelsFileName));
// FileToWrite.WriteLine(String.Format("ReducedVectorOutputFileName:{0}", DataforthisRun.ReducedVectorOutputFileName));
// FileToWrite.WriteLine(String.Format("ClusterDirectory:{0}", DataforthisRun.ClusterDirectory));
// FileToWrite.WriteLine(String.Format("DataPoints:{0}", DataforthisRun.DataPoints));
// FileToWrite.WriteLine(String.Format("ProcessingOption:{0}", DataforthisRun.ProcessingOption));
// FileToWrite.WriteLine(String.Format("DistanceProcessingOption:{0}", DataforthisRun.DistanceProcessingOption));
// FileToWrite.WriteLine(String.Format("InitializationOption:{0}", DataforthisRun.InitializationOption));
// FileToWrite.WriteLine(String.Format("InitializationFileName:{0}", DataforthisRun.InitializationFileName));
// FileToWrite.WriteLine(String.Format("WeightingOption:{0}", DataforthisRun.WeightingOption));
// FileToWrite.WriteLine(String.Format("WeightingFileName:{0}", DataforthisRun.WeightingFileName));
// FileToWrite.WriteLine(String.Format("write2Das3D:{0}", DataforthisRun.write2Das3D));
// FileToWrite.WriteLine(String.Format("LocalVectorDimension:{0}", DataforthisRun.LocalVectorDimension));
// FileToWrite.WriteLine(String.Format("selectedvariedpoints:{0}", DataforthisRun.selectedvariedpoints));
// FileToWrite.WriteLine(String.Format("VariedPointCriterion:{0}", DataforthisRun.VariedPointCriterion));
// FileToWrite.WriteLine(String.Format("selectedvariedpointfile:{0}", DataforthisRun.selectedvariedpointfile));
// FileToWrite.WriteLine(String.Format("selectedfixedpoints:{0}", DataforthisRun.selectedfixedpoints));
// FileToWrite.WriteLine(String.Format("FixedPointCriterion:{0}", DataforthisRun.FixedPointCriterion));
// FileToWrite.WriteLine(String.Format("selectedfixedpointfile:{0}", DataforthisRun.selectedfixedpointfile));
// FileToWrite.WriteLine(String.Format("ConversionOption:{0}", DataforthisRun.ConversionOption));
// FileToWrite.WriteLine(String.Format("ConversionInformation:{0}", DataforthisRun.ConversionInformation));
// FileToWrite.WriteLine(String.Format("RotationOption:{0}", DataforthisRun.RotationOption));
// FileToWrite.WriteLine(String.Format("RotationLabelsFileName:{0}", DataforthisRun.RotationLabelsFileName));
// FileToWrite.WriteLine(String.Format("InitializationLoops:{0}", DataforthisRun.InitializationLoops));
// FileToWrite.WriteLine(String.Format("Chisqnorm:{0}", DataforthisRun.Chisqnorm));
// FileToWrite.WriteLine(String.Format("DistanceFormula:{0}", DataforthisRun.DistanceFormula));
// FileToWrite.WriteLine(String.Format("FullSecondDerivativeOption:{0}", DataforthisRun.FullSecondDerivativeOption));
// FileToWrite.WriteLine(String.Format("MinimumDistance:{0}", DataforthisRun.MinimumDistance));
// FileToWrite.WriteLine(String.Format("FunctionErrorCalcMultiplier:{0}", DataforthisRun.FunctionErrorCalcMultiplier));
// FileToWrite.WriteLine(String.Format("ChisqPrintConstant:{0}", DataforthisRun.ChisqPrintConstant));
// FileToWrite.WriteLine(String.Format("maxit:{0}", DataforthisRun.maxit));
// FileToWrite.WriteLine(String.Format("nbadgo:{0}", DataforthisRun.nbadgo));
// FileToWrite.WriteLine(String.Format("ChisqChangePerPoint:{0}", DataforthisRun.ChisqChangePerPoint));
// FileToWrite.WriteLine(String.Format("FletcherRho:{0}", DataforthisRun.FletcherRho));
// FileToWrite.WriteLine(String.Format("FletcherSigma:{0}", DataforthisRun.FletcherSigma));
// FileToWrite.WriteLine(String.Format("Omega:{0}", DataforthisRun.Omega));
// FileToWrite.WriteLine(String.Format("OmegaOption:{0}", DataforthisRun.OmegaOption));
// FileToWrite.WriteLine(String.Format("QHighInitialFactor:{0}", DataforthisRun.QHighInitialFactor));
// FileToWrite.WriteLine(String.Format("QgoodReductionFactor:{0}", DataforthisRun.QgoodReductionFactor));
// FileToWrite.WriteLine(String.Format("QLimitscalculationInterval:{0}", DataforthisRun.QLimitscalculationInterval));
// FileToWrite.WriteLine(String.Format("extraprecision:{0}", DataforthisRun.extraprecision));
// FileToWrite.WriteLine(String.Format("addonforQcomputation:{0}", DataforthisRun.addonforQcomputation));
// FileToWrite.WriteLine(String.Format("InitialSteepestDescents:{0}", DataforthisRun.InitialSteepestDescents));
// FileToWrite.WriteLine(String.Format("TimeCutmillisec:{0}", DataforthisRun.TimeCutmillisec));
// FileToWrite.WriteLine(String.Format("CGResidualLimit:{0}", DataforthisRun.CGResidualLimit));
// FileToWrite.WriteLine(String.Format("PowerIterationLimit:{0}", DataforthisRun.PowerIterationLimit));
// FileToWrite.WriteLine(String.Format("eigenvaluechange:{0}", DataforthisRun.eigenvaluechange));
// FileToWrite.WriteLine(String.Format("eigenvectorchange:{0}", DataforthisRun.eigenvectorchange));
// FileToWrite.WriteLine(String.Format("derivtest:{0}", DataforthisRun.derivtest));
// FileToWrite.WriteLine(String.Format("RunNumber:{0}", DataforthisRun.RunNumber));
// FileToWrite.WriteLine(String.Format("BaseResultDirectoryName:{0}", DataforthisRun.BaseResultDirectoryName));
// FileToWrite.WriteLine(String.Format("ResultDirectoryExtension:{0}", DataforthisRun.ResultDirectoryExtension));
// FileToWrite.WriteLine(String.Format("TimingOutputFileName:{0}", DataforthisRun.TimingOutputFileName));
// FileToWrite.WriteLine(String.Format("RunSetLabel:{0}", DataforthisRun.RunSetLabel));
// FileToWrite.WriteLine(String.Format("ControlDirectoryName:{0}", DataforthisRun.ControlDirectoryName));
// FileToWrite.WriteLine(String.Format("pattern:{0}", DataforthisRun.pattern));
// FileToWrite.WriteLine(String.Format("ThreadCount:{0}", DataforthisRun.ThreadCount));
// FileToWrite.WriteLine(String.Format("NodeCount:{0}", DataforthisRun.NodeCount));
// FileToWrite.WriteLine(String.Format("MPIperNodeCount:{0}", DataforthisRun.MPIperNodeCount));
// FileToWrite.WriteLine(String.Format("MPIIOStrategy:{0}", DataforthisRun.MPIIOStrategy));
// FileToWrite.WriteLine(String.Format("HistogramBinCount:{0}", DataforthisRun.HistogramBinCount));
// FileToWrite.WriteLine(String.Format("Extradata1:{0}", DataforthisRun.Extradata1));
// FileToWrite.WriteLine(String.Format("Extradata2:{0}", DataforthisRun.Extradata2));
// FileToWrite.WriteLine(String.Format("Extradata3:{0}", DataforthisRun.Extradata3));
// FileToWrite.WriteLine(String.Format("Extradata4:{0}", DataforthisRun.Extradata4));
// FileToWrite.WriteLine(String.Format("ExtraOption1:{0}", DataforthisRun.ExtraOption1));
// FileToWrite.WriteLine(String.Format("DebugPrintOption:{0}", DataforthisRun.DebugPrintOption));
// FileToWrite.WriteLine(String.Format("ConsoleDebugOutput:{0}", DataforthisRun.ConsoleDebugOutput));
// string usercomments = ManxcatCentral.Configuration.Comment; // todo: saliya - handle comments afterwards
// if (usercomments != "")
// {
// string[] split = usercomments.Split(new char[] { '\n' });
// for (int runthroughcomments = 0; runthroughcomments < split.Length; runthroughcomments++)
// {
// if (split[runthroughcomments] != "")
// FileToWrite.WriteLine(String.Format("Comment:{0}", split[runthroughcomments]));
// }
// }
// }
// FileToWrite.Flush();
// FileToWrite.Close();
// }
// catch (Exception e)
// {
// Console.WriteLine("Failed writing data" + e);
// }
//} // End WriteControl_Cluster
// Write Results summary data into a file
// Read Control Data
//public static void ReadControl_Cluster(string ControlFileName, ref RunMetadata DataforthisRun)
//{
// DataforthisRun.DataFileName = "";
// DataforthisRun.DataLabelsFileName = "";
// DataforthisRun.ReducedVectorOutputFileName = "";
// DataforthisRun.ClusterDirectory = "";
// DataforthisRun.DataPoints = 0;
// DataforthisRun.ProcessingOption = 0;
// DataforthisRun.DistanceProcessingOption = 0;
// DataforthisRun.InitializationOption = 0;
// DataforthisRun.InitializationFileName = "";
// DataforthisRun.write2Das3D = true; // for 2D MDS write output for 3D viewer
// DataforthisRun.LocalVectorDimension = 3; // Final MDS dimension (2 or 3 expected)
// DataforthisRun.selectedvariedpoints = ""; // List of varied points specified by point number or cluster number
// DataforthisRun.VariedPointCriterion = "all"; // If 0 all the non-fixed points varied; if > 0 choose a subset of points to be varied; 1 =1 select by Original Point Number; =2 Select by group (family, cluster)
// DataforthisRun.selectedvariedpointfile = ""; // File containing mapping of groups to original values
// DataforthisRun.selectedfixedpoints = ""; // List of fixed points specified by point number or group number
// DataforthisRun.FixedPointCriterion = "none"; // If 0 there are no fixed points; if > 0 choose a subset of points to be fixed; 1 =1 select by Original Point Number; =2 Select by group (family, cluster)
// DataforthisRun.selectedfixedpointfile = ""; // File containing distances of fixed points
// DataforthisRun.RotationOption = 0; // Control Rotation
// DataforthisRun.RotationLabelsFileName = ""; // File with application specific labels for data to be rotated
// DataforthisRun.Chisqnorm = 0;
// DataforthisRun.DistanceFormula = 0;
// DataforthisRun.FullSecondDerivativeOption = 0;
// DataforthisRun.MinimumDistance = -0.001; // Minimum Distance for Chisq Normalization
// DataforthisRun.FunctionErrorCalcMultiplier = 10.0; // Multiplicative Constant for Function (square this for Chisq) Error Calculation
// DataforthisRun.ChisqPrintConstant = 1.0; // Multiplicative Constant for Chisq Printing
// DataforthisRun.maxit = 20; // Maximum Number of Manxcat Iterations
// DataforthisRun.nbadgo = 6; // Limit on Iterations with no progress
// DataforthisRun.ChisqChangePerPoint = 0.001; // Stop when this is Chisq change per point
// DataforthisRun.FletcherRho = 0.25; // Fletcher's parameter rho
// DataforthisRun.FletcherSigma = 0.75; // Fletcher's Parameter sigma
// DataforthisRun.Omega = 1.25;
// DataforthisRun.OmegaOption = 0;
// DataforthisRun.QHighInitialFactor = 0.01; // Initial call uses this fraction of Qhigh for Q (added 2009)
// DataforthisRun.QgoodReductionFactor = 0.5; // Set to zero to make Q = 0. for good solutions
// DataforthisRun.QLimitscalculationInterval = 1; // recalculate Qhigh Qlow Trace and Norm after this number of iterations
// DataforthisRun.addonforQcomputation = 2.0; // Add this to make Power Method Safer
// DataforthisRun.extraprecision = 0.05;
// DataforthisRun.InitialSteepestDescents = 0; // Start minimization with this number of Steepest Descent Iterations
// DataforthisRun.TimeCutmillisec = -1.0; // if positive, Stop when time used in milliseconds greater than timmax
// DataforthisRun.CGResidualLimit = 0.00001; // Stop when Norm of Residual is less than this
// DataforthisRun.PowerIterationLimit = 200; // Limit on Power Iterations
// DataforthisRun.eigenvaluechange = 0.001; // convergence test in power method for eigenvalues
// DataforthisRun.eigenvectorchange = 0.001; // convergence test in power method for eigenvector
// DataforthisRun.derivtest = false;
// DataforthisRun.TimingOutputFileName = "";
// DataforthisRun.BaseResultDirectoryName = "";
// DataforthisRun.ResultDirectoryExtension = "";
// DataforthisRun.ControlDirectoryName = "";
// DataforthisRun.RunSetLabel = "";
// DataforthisRun.RunNumber = 0;
// DataforthisRun.pattern = "";
// DataforthisRun.ThreadCount = 1; // Number of Threads
// DataforthisRun.NodeCount = 1; // Number of Nodes
// DataforthisRun.MPIperNodeCount = 1; // Number of MPI processes per Node
// DataforthisRun.MPIIOStrategy = 0; // Controls strategy of file handling with MPI =0 is ONE FILE
// DataforthisRun.HistogramBinCount = 100;
// DataforthisRun.Comment = "";
// DataforthisRun.Extradata1 = "";
// DataforthisRun.Extradata2 = "";
// DataforthisRun.Extradata3 = "";
// DataforthisRun.Extradata4 = "";
// DataforthisRun.ExtraOption1 = 0;
// DataforthisRun.DebugPrintOption = 1;
// DataforthisRun.ConsoleDebugOutput = false;
// try
// {
// // Check if file exists
// if (!File.Exists(ControlFileName))
// {
// Console.WriteLine("File {0} does not exist", ControlFileName);
// return;
// }
// // Create a new stream to read from a file
// using (StreamReader sr = File.OpenText(ControlFileName))
// {
// // Read contents of a file, line by line, into a string
// String inputLineStr;
// while ((inputLineStr = sr.ReadLine()) != null)
// {
// if (inputLineStr.Length < 2) continue; // Ignore empty line
// inputLineStr.Trim(); // Remove all beginning and Trailing white spaces
// try
// {
// // Parse each record string
// string[] split = inputLineStr.Split(new char[] { ':' }, 2);
// if (split.Length < 2)
// {
// Console.WriteLine("No deliminator in " + inputLineStr);
// }
// split[0] = split[0].Trim();
// split[1] = split[1].Trim();
// if (split[0].Equals("DataFileName"))
// DataforthisRun.DataFileName = split[1];
// if (split[0].Equals("DataLabelsFileName"))
// DataforthisRun.DataLabelsFileName = split[1];
// if (split[0].Equals("ReducedVectorOutputFileName"))
// DataforthisRun.ReducedVectorOutputFileName = split[1];
// if (split[0].Equals("ClusterDirectory"))
// DataforthisRun.ClusterDirectory = split[1];
// if (split[0].Equals("DataPoints"))
// DataforthisRun.DataPoints = Convert.ToInt32(split[1]);
// if (split[0].Equals("ProcessingOption"))
// DataforthisRun.ProcessingOption = Convert.ToInt32(split[1]);
// if (split[0].Equals("DistanceProcessingOption"))
// DataforthisRun.DistanceProcessingOption = Convert.ToInt32(split[1]);
// if (split[0].Equals("InitializationOption"))
// DataforthisRun.InitializationOption = Convert.ToInt32(split[1]);
// if (split[0].Equals("InitializationFileName"))
// DataforthisRun.InitializationFileName = split[1];
// if (split[0].Equals("write2Das3D"))
// DataforthisRun.write2Das3D = Convert.ToBoolean(split[1]);
// if (split[0].Equals("LocalVectorDimension"))
// DataforthisRun.LocalVectorDimension = Convert.ToInt32(split[1]);
// if (split[0].Equals("selectedvariedpoints"))
// DataforthisRun.selectedvariedpoints = split[1];
// if (split[0].Equals("VariedPointCriterion"))
// DataforthisRun.VariedPointCriterion = split[1].ToLower();
// if (split[0].Equals("selectedvariedpointfile"))
// DataforthisRun.selectedvariedpointfile = split[1];
// if (split[0].Equals("selectedfixedpoints"))
// DataforthisRun.selectedfixedpoints = split[1];
// if (split[0].Equals("FixedPointCriterion"))
// DataforthisRun.FixedPointCriterion = split[1].ToLower();
// if (split[0].Equals("selectedfixedpointfile"))
// DataforthisRun.selectedfixedpointfile = split[1];
// if (split[0].Equals("RotationOption"))
// DataforthisRun.RotationOption = Convert.ToInt32(split[1]);
// if (split[0].Equals("RotationLabelsFileName"))
// DataforthisRun.RotationLabelsFileName = split[1];
// if (split[0].Equals("Chisqnorm"))
// DataforthisRun.Chisqnorm = Convert.ToInt32(split[1]);
// if (split[0].Equals("DistanceFormula"))
// DataforthisRun.DistanceFormula = Convert.ToInt32(split[1]);
// if (split[0].Equals("FullSecondDerivativeOption"))
// DataforthisRun.FullSecondDerivativeOption = Convert.ToInt32(split[1]);
// if (split[0].Equals("MinimumDistance"))
// DataforthisRun.MinimumDistance = Convert.ToDouble(split[1]);
// if (split[0].Equals("FunctionErrorCalcMultiplier"))
// DataforthisRun.FunctionErrorCalcMultiplier = Convert.ToDouble(split[1]);
// if (split[0].Equals("ChisqPrintConstant"))
// DataforthisRun.ChisqPrintConstant = Convert.ToDouble(split[1]);
// if (split[0].Equals("maxit"))
// DataforthisRun.maxit = Convert.ToInt32(split[1]);
// if (split[0].Equals("nbadgo"))
// DataforthisRun.nbadgo = Convert.ToInt32(split[1]);
// if (split[0].Equals("ChisqChangePerPoint"))
// DataforthisRun.ChisqChangePerPoint = Convert.ToDouble(split[1]);
// if (split[0].Equals("FletcherRho"))
// DataforthisRun.FletcherRho = Convert.ToDouble(split[1]);
// if (split[0].Equals("FletcherSigma"))
// DataforthisRun.FletcherSigma = Convert.ToDouble(split[1]);
// if (split[0].Equals("Omega"))
// DataforthisRun.Omega = Convert.ToDouble(split[1]);
// if (split[0].Equals("OmegaOption"))
// DataforthisRun.OmegaOption = Convert.ToInt32(split[1]);
// if (split[0].Equals("QHighInitialFactor"))
// DataforthisRun.QHighInitialFactor = Convert.ToDouble(split[1]);
// if (split[0].Equals("QgoodReductionFactor"))
// DataforthisRun.QgoodReductionFactor = Convert.ToDouble(split[1]);
// if (split[0].Equals("QLimitscalculationInterval"))
// DataforthisRun.QLimitscalculationInterval = Convert.ToInt32(split[1]);
// if (split[0].Equals("addonforQcomputation"))
// DataforthisRun.addonforQcomputation = Convert.ToDouble(split[1]);
// if (split[0].Equals("extraprecision"))
// DataforthisRun.extraprecision = Convert.ToDouble(split[1]);
// if (split[0].Equals("InitialSteepestDescents"))
// DataforthisRun.InitialSteepestDescents = Convert.ToInt32(split[1]);
// if (split[0].Equals("TimeCutmillisec"))
// DataforthisRun.TimeCutmillisec = Convert.ToDouble(split[1]);
// if (split[0].Equals("CGResidualLimit"))
// DataforthisRun.CGResidualLimit = Convert.ToDouble(split[1]);
// if (split[0].Equals("PowerIterationLimit"))
// DataforthisRun.PowerIterationLimit = Convert.ToInt32(split[1]);
// if (split[0].Equals("eigenvaluechange"))
// DataforthisRun.eigenvaluechange = Convert.ToDouble(split[1]);
// if (split[0].Equals("eigenvectorchange"))
// DataforthisRun.eigenvectorchange = Convert.ToDouble(split[1]);
// if (split[0].Equals("derivtest"))
// DataforthisRun.derivtest = Convert.ToBoolean(split[1]);
// if (split[0].Equals("TimingOutputFileName"))
// DataforthisRun.TimingOutputFileName = split[1];
// if (split[0].Equals("BaseResultDirectoryName"))
// DataforthisRun.BaseResultDirectoryName = split[1];
// if (split[0].Equals("ResultDirectoryExtension"))
// DataforthisRun.ResultDirectoryExtension = split[1];
// if (split[0].Equals("ControlDirectoryName"))
// DataforthisRun.ControlDirectoryName = split[1];
// if (split[0].Equals("RunSetLabel"))
// DataforthisRun.RunSetLabel = split[1];
// if (split[0].Equals("RunNumber"))
// DataforthisRun.RunNumber = Convert.ToInt32(split[1]);
// if (split[0].Equals("pattern"))
// DataforthisRun.pattern = split[1];
// if (split[0].Equals("ThreadCount"))
// DataforthisRun.ThreadCount = Convert.ToInt32(split[1]);
// if (split[0].Equals("NodeCount"))
// DataforthisRun.NodeCount = Convert.ToInt32(split[1]);
// if (split[0].Equals("MPIperNodeCount"))
// DataforthisRun.MPIperNodeCount = Convert.ToInt32(split[1]);
// if (split[0].Equals("MPIIOStrategy"))
// DataforthisRun.MPIIOStrategy = Convert.ToInt32(split[1]);
// if (split[0].Equals("HistogramBinCount"))
// DataforthisRun.HistogramBinCount = Convert.ToInt32(split[1]);
// if (split[0].Equals("Comment"))
// {
// if (DataforthisRun.Comment != "")
// DataforthisRun.Comment += "\n";
// DataforthisRun.Comment += split[1];
// }
// if (split[0].Equals("Extradata1"))
// DataforthisRun.Extradata1 = split[1];
// if (split[0].Equals("Extradata2"))
// DataforthisRun.Extradata2 = split[1];
// if (split[0].Equals("Extradata3"))
// DataforthisRun.Extradata3 = split[1];
// if (split[0].Equals("Extradata4"))
// DataforthisRun.Extradata4 = split[1];
// if (split[0].Equals("ExtraOption1"))
// DataforthisRun.ExtraOption1 = Convert.ToInt32(split[1]);
// if (split[0].Equals("DebugPrintOption"))
// DataforthisRun.DebugPrintOption = Convert.ToInt32(split[1]); ;
// if (split[0].Equals("ConsoleDebugOutput"))
// DataforthisRun.ConsoleDebugOutput = Convert.ToBoolean(split[1]);
// }
// catch
// {
// Console.WriteLine("Failed to load Control File");
// }
// } // End while reading lines
// sr.Close();
// }
// }
// catch (Exception e)
// {
// Console.WriteLine("Failed to read Control File " + e);
// }
//} // End ReadControl_Cluster
#endregion
public static void WriteResults_Cluster(string ControlFileName, ArrayList linestooutput)
{
try
{
StreamWriter FileToWrite = null;
if (!string.IsNullOrEmpty(ControlFileName))
{
FileToWrite = new StreamWriter(ControlFileName, true, Encoding.UTF8); // Overwrite
}
if (FileToWrite != null)
{
FileToWrite.WriteLine();
int LineLength = linestooutput.Count;
for (int countlines = 0; countlines < LineLength; countlines++)
{
FileToWrite.WriteLine(linestooutput[countlines]);
}
}
FileToWrite.Flush();
FileToWrite.Close();
}
catch (Exception e)
{
Console.WriteLine("Failed writing data {0} " + e, ControlFileName);
throw (e);
}
}
public DataFlowContext(CommandLineArguments args, ConsumerThreadEventsManager consumerThreadEventsManager)
{
ConsumerEventsManager = consumerThreadEventsManager;
ReadFile = new FileToRead(args.InputFile);
WriteFile = new FileToWrite(args.OutputFile);
BlockQueue = new BlockingQueue <ProcessingBlock>(Environment.ProcessorCount * 2); // let it be twice the number of threads
}
