コード例 #1
0
//JAVA TO C# CONVERTER TODO TASK: Most Java annotations will not have direct .NET equivalent attributes:
//ORIGINAL LINE: @Override @Requires({"encodingType != null", "nValuesPerGenotype >= 0 || ! getFieldEncoder().hasConstantNumElements()"}) @Ensures("nValuesPerGenotype >= 0") public void start(final BCF2Encoder encoder, final org.broadinstitute.variant.variantcontext.VariantContext vc) throws java.io.IOException
//JAVA TO C# CONVERTER WARNING: Method 'throws' clauses are not available in .NET:
//JAVA TO C# CONVERTER WARNING: 'final' parameters are not allowed in .NET:
            public override void start(BCF2Encoder encoder, VariantContext vc)
            {
                // writes the key information
                base.start(encoder, vc);

                // only update if we need to
                if (!FieldEncoder.hasConstantNumElements())
                {
                    if (FieldEncoder.hasContextDeterminedNumElements())
                    // we are cheap -- just depends on genotype of allele counts
                    {
                        nValuesPerGenotype = FieldEncoder.numElements(vc);
                    }
                    else
                    // we have to go fishing through the values themselves (expensive)
                    {
                        nValuesPerGenotype = computeMaxSizeOfGenotypeFieldFromValues(vc);
                    }
                }

                encoder.encodeType(nValuesPerGenotype, encodingType);
            }