public override void InternalExecute(int maxThreads)
{
try
{
Logger.WriteToLog("Processing genome '{0}' with {1} threads", Genome.Directory, maxThreads);
var jobs = new List <IJob>();
foreach (var chrName in Genome.ChromosomesToProcess)
{
foreach (var inputFile in _inputFiles)
{
var job = new ExternalProcessJob(chrName)
{
ExecutablePath = _exePath,
CommandLineArguments = GetCommandLineArgs(chrName, inputFile)
};
if (Utilities.IsThisMono())
{
string discoveredMono = Utilities.GetMonoPath();
job.CommandLineArguments = job.ExecutablePath + " " + job.CommandLineArguments;
job.ExecutablePath = _monoPath ?? discoveredMono;
Logger.WriteToLog(string.Format("Mono path from command line is {0}", _monoPath ?? "empty"));
Logger.WriteToLog(string.Format("Mono path discovered is {0}", discoveredMono ?? "empty"));
if ((string.IsNullOrEmpty(_monoPath)) && (string.IsNullOrEmpty(discoveredMono)))
{
Logger.WriteToLog(string.Format("Warning: Unable to determine mono path."));
}
if (!(string.IsNullOrEmpty(_monoPath)) && !(string.IsNullOrEmpty(discoveredMono)))
{
if (_monoPath != discoveredMono)
{
Logger.WriteToLog(
string.Format(
"Warning: Mono path from command line does not match mono version discovered"));
}
}
Logger.WriteToLog(string.Format("Mono path {0} will be used.", job.ExecutablePath));
}
Logger.WriteToLog(string.Format("Launching process: {0} {1}", job.ExecutablePath,
job.CommandLineArguments));
jobs.Add(job);
}
}
JobManager.Process(jobs); // process all jobs
}
finally
{
Finish();
}
}
public void CancellingKillsTheProcess()
{
var jobManager = new JobManager(3, JobErrorHandlingMode.Terminate);
var externalJob = new ExternalProcessJob("foo")
{
ExecutablePath = "notepad.exe"
};
var jobs = new List <IJob>
{
externalJob,
new GenericJob(() =>
{
while (!externalJob.Started)
{
Thread.Sleep(100);
}
// the program should have started by now - trigger the error
throw new ApplicationException("Bad monkey");
})
};
Assert.Throws <ApplicationException>(() => jobManager.Process(jobs));
Assert.True(externalJob.Terminated);
}
