public static List <int> DoPoc_GhostStructToNativeStruct()
{
Console.WriteLine("DoPoc_GhostStructToNativeStruct");
//Representa as posições do CUBO FANTASMA
List <BasicStructs.Point> ghostCube = new List <BasicStructs.Point>();
//Path do local de execução do executável
string path = System.Environment.CurrentDirectory;
ExtendedStreamReader ghostCubeFile = new ExtendedStreamReader(path + @"\cuboFantasma.dat", new Guid(), false);
//Carrega CUBO FANTASMA
string line = string.Empty;
while ((line = ghostCubeFile.ReadLine()) != null)
{
string[] data = line.Split('\t'); //separa informações através do caracter TAB
data = data.Where(x => !string.IsNullOrEmpty(x)).ToArray(); //limpa eventuais espaços em branco
BasicStructs.Point temp = new BasicStructs.Point();
temp.x = Convert.ToInt16(data[0]);
temp.y = Convert.ToInt16(data[1]);
temp.z = Convert.ToInt16(data[2]);
ghostCube.Add(temp);
}
ghostCubeFile.Close();
int cordX = 0;
int cordY = 0;
int cordZ = 0;
List <int> newSequece = new List <int>();
Console.WriteLine("De: ");
//Motor de busca, ele retorna posição do INDICE da lista, em relação a condição de busca
ExtendedStreamReader structOfSimulation = new ExtendedStreamReader(path + @"\00003.dat", new Guid(), false);
//Carrega ESTRUTURA SIMULADA
line = string.Empty;
while ((line = structOfSimulation.ReadLine()) != null)
{
string[] data = line.Split('\t'); //separa informações através do caracter TAB
data = data.Where(x => !string.IsNullOrEmpty(x)).ToArray(); //limpa eventuais espaços em branco
cordX = Convert.ToInt16(data[0]);
cordY = Convert.ToInt16(data[1]);
cordZ = Convert.ToInt16(data[2]);
newSequece.Add(ghostCube.FindIndex(coord => coord.x == cordX && coord.y == cordY && coord.z == cordZ) + 1);
Console.WriteLine("{0} {1} {2}", cordX, cordY, cordZ);
}
//Print a RESULTADO DA CONFIGURACAO
Console.Write("Para: ");
foreach (int item in newSequece)
{
Console.Write("{0} ", item);
}
Console.WriteLine();
return(newSequece);
}
//static string Server = "Server";
//static string Web = "Web";
private void DecrypAllFiles(string[] diretories, string destination)
{
foreach (string path in diretories)
{
//string newWebFolder = path.Replace(Server, Web);
Directory.CreateDirIfNotExist(destination);
foreach (string tempFile in Directory.GetFilesOfDir(path))
{
string newWebFile = string.Empty;
//newWebFile = tempFile.Replace(Server, Web);
newWebFile = destination + Path.GetFileName(tempFile);
string extensionFile = Path.GetExtension(tempFile);
if (extensionFile == ".xls")
{
File.Copy(tempFile, newWebFile, true);
}
else
{
if (param.dataToProcess.crypt)
{
//DADOS
string line;
using (ExtendedStreamReader fileReader = new ExtendedStreamReader(tempFile, this.param.dataToProcess.Guid, AppConfigClient.Crypt))
{
ExtendedStreamWriter fileWriter = new ExtendedStreamWriter(newWebFile, false, this.param.dataToProcess.Guid, false);
while ((line = fileReader.ReadLine()) != null)
{
if (String.IsNullOrEmpty(line))
{
break;
}
fileWriter.WriteLine(line);
}
fileReader.Close();
//fileReader = null;
fileWriter.Flush();
fileWriter.Close();
fileWriter = null;
fileReader.Dispose();
}
//FIM DADOS
}
else
{
File.Copy(tempFile, newWebFile, true);
}
}
}
}
}
public static List <BasicStructs.Point> DoNativeStructToGhostStruct(List <int> nativeStruct)
{
//Representa a estrutura do CUBO FANTASMA
List <BasicStructs.Point> ghostCube = new List <BasicStructs.Point>();
//Representa qual linha foi escolhida, no arquivo de configuração
int[] seqToMakeNewStruct = new int[27];
//Representa a nova estrutura a ser gerada
List <BasicStructs.Point> newStruct = new List <BasicStructs.Point>();
//Path do local de execução do executável
string path = System.Environment.CurrentDirectory;
ExtendedStreamReader ghostCubeFile = new ExtendedStreamReader(path + @"\cuboFantasma.dat", new Guid(), false);
//Leitura das COORDENADAS BASICAS para os 27 monomeros(coordenadas estabelecidas arbitrariamente, mas fixas)
string line = string.Empty;
while ((line = ghostCubeFile.ReadLine()) != null)
{
string[] data = line.Split('\t'); //separa informações através do caracter TAB
data = data.Where(x => !string.IsNullOrEmpty(x)).ToArray(); //limpa eventuais espaços em branco
BasicStructs.Point temp = new BasicStructs.Point();
temp.x = Convert.ToInt16(data[0]);
temp.y = Convert.ToInt16(data[1]);
temp.z = Convert.ToInt16(data[2]);
ghostCube.Add(temp);
}
ghostCubeFile.Close();
//Gera mapeamento da nova estrutura
int ik = 0;
foreach (int item in nativeStruct)
{
seqToMakeNewStruct[ik] = item;
ik++;
}
//Guardar as coordenadas para cada monomero da ie configuracao desejada
for (int ipos = 0; ipos < 27; ipos++)
{
BasicStructs.Point temp = new BasicStructs.Point();
int imon = seqToMakeNewStruct[ipos] - 1;
temp.x = ghostCube[imon].x;
temp.y = ghostCube[imon].y;
temp.z = ghostCube[imon].z;
newStruct.Add(temp);
}
return(newStruct);
}
private void SheetDebug(ref XLWorkbook workbook)
{
string sheetName = "debug";
var worksheet01 = workbook.Worksheets.Add(sheetName);
//DADOS
string line;
int numberofLines = ExtendedStreamReader.LinesOfFile(dirServerDebug + @"\" + debugFile);
//List<string> lines = new List<string>();
using (ExtendedStreamReader file = new ExtendedStreamReader(dirServerDebug + @"\" + debugFile, this.param.dataToProcess.Guid, this.param.dataToProcess.crypt))
{
int rec = 0;
int idx = 0;
while ((line = file.ReadLine()) != null)
{
if (!(idx < 1048576))
{
break;
}
if (String.IsNullOrEmpty(line))
{
break;
}
WriteSecondSheet(line, idx, ref worksheet01);
idx++;
if (rec == 99999)
{
SaveDebug(ref workbook);
//http://stackoverflow.com/questions/22747360/append-to-excel-file-with-closedxml
//int NumberOfLastRow = worksheet01.LastRowUsed().RowNumber();
//IXLCell CellForNewData = worksheet01.Cell(NumberOfLastRow + 1, 1);
rec = 0;
PrintPercentCompleted(idx, numberofLines);
}
else
{
rec++;
}
}
file.Close();
file.Dispose();
}
//FIM DADOS
}
private void SheetConfiguration(ref XLWorkbook workbook)
{
string sheetName = "Configuration";
string configuration = "Configuration.dat";
var worksheet01 = workbook.Worksheets.Add(sheetName);
//DADOS
string line;
List <string> lines = new List <string>();
ExtendedStreamReader file = new ExtendedStreamReader(dirWebExcel + @"\" + configuration, this.param.dataToProcess.Guid, false);
while ((line = file.ReadLine()) != null)
{
if (String.IsNullOrEmpty(line))
{
break;
}
lines.Add(line);
}
file.Close();
//FIM DADOS
//HEADER
worksheet01.Cell("A1").Value = sheetName;
//INFOS
string value = string.Empty;
string refCell = string.Empty;
for (int i = 0; i < lines.Count; i++)
{
string[] cols = lines[i].Split('\t');
for (int j = 0; j < cols.Length; j++)
{
value = Convert.ToString(cols[j]);
//refCell = ((char)(65 + j)).ToString();
refCell = ExcelColumnFromNumber(j + 1) + (i + 2);
worksheet01.Cell(refCell).Value = value;
}
}
lines = null;
//FIM DATASHEET
}
public static List <Point> CreateTarget(string strucFull)
{
string[] struc = strucFull.Split(' '); //Quebra a linha em posições na array atravéz do espaço
struc = struc.Where(x => !string.IsNullOrEmpty(x)).ToArray(); //Remove os espaços em branco, deixa estrutura somente com posições válidas
if (coord.Count == 0)
{
//Lê o arquivo sample de geração das coordenadas
string line;
string path = System.Environment.CurrentDirectory;
ExtendedStreamReader fileReader = new ExtendedStreamReader(path + @"\coord" + Directory.FileExtension, new Guid(), false);
while ((line = fileReader.ReadLine()) != null)
{
string[] tempFile = line.Split(' ');
tempFile = tempFile.Where(x => !string.IsNullOrEmpty(x)).ToArray();
coord.Add(new Point()
{
x = Convert.ToInt16(tempFile[0]), y = Convert.ToInt16(tempFile[1]), z = Convert.ToInt16(tempFile[2])
});
}
fileReader.Close();
}
//Incrimento inicial das posições do cubo x,y,z
List <Point> points = new List <Point>(); //Uma lista encadeada do tipo PointCube
for (int i = 0; i < coord.Count(); i++)
{
int pos = Convert.ToInt16(struc[i]) - 1;
Point point = new Point()
{
x = coord[pos].x, y = coord[pos].y, z = coord[pos].z
};
points.Add(point);
//Console.WriteLine("{0},{1},{2}", points[i].x, points[i].y, points[i].z);
}
return(points);
}
public static List <int> DoGhostStructToNativeStruct(List <BasicStructs.Point> trajectoryToStruct, string nameFileGhostCube)
{
//Representa as posições do CUBO FANTASMA
List <BasicStructs.Point> ghostCube = new List <BasicStructs.Point>();
//Path do local de execução do executável
string path = System.Environment.CurrentDirectory;
ExtendedStreamReader ghostCubeFile = new ExtendedStreamReader(path + @"\" + nameFileGhostCube, new Guid(), false);
//Carrega CUBO FANTASMA
string line = string.Empty;
while ((line = ghostCubeFile.ReadLine()) != null)
{
string[] data = line.Split('\t'); //separa informações através do caracter TAB
data = data.Where(x => !string.IsNullOrEmpty(x)).ToArray(); //limpa eventuais espaços em branco
BasicStructs.Point temp = new BasicStructs.Point();
temp.x = Convert.ToInt16(data[0]);
temp.y = Convert.ToInt16(data[1]);
temp.z = Convert.ToInt16(data[2]);
ghostCube.Add(temp);
}
ghostCubeFile.Close();
int cordX = 0;
int cordY = 0;
int cordZ = 0;
List <int> newSequece = new List <int>();
//Carrega ESTRUTURA SIMULADA
foreach (BasicStructs.Point item in trajectoryToStruct)
{
cordX = Convert.ToInt16(item.x);
cordY = Convert.ToInt16(item.y);
cordZ = Convert.ToInt16(item.z);
newSequece.Add(ghostCube.FindIndex(coord => coord.x == cordX && coord.y == cordY && coord.z == cordZ) + 1);
}
return(newSequece);
}
/// <summary>
/// Carrega as coordenadas geradas da SEMENTE
/// </summary>
public static void LoadSeedCoord(string file, bool firstLineIsIsemNUmber)
{
//string dir = Members.workSpace + @"\" + Resource.SubDirSeed;
//string pathFile = dir + @"\" + file + Consts.extensionOfFile;
using (ExtendedStreamReader sr = new ExtendedStreamReader(file, Config.CurrentGuid, true))
{
string line = string.Empty;
string[] temp = new string[3];
GCPS.Reset();
bool first = true;
while ((line = sr.ReadLine()) != null)
{
if (first && firstLineIsIsemNUmber)
{
GCPS.chain.isem = Convert.ToInt32(line);
first = false;
}
else
{
temp = Regex.Split(line, "\t"); //temp = line.Split(new char[] { '\t' });
GCPS.chain.r.Add(new BasicStructs.Point()
{
x = Convert.ToInt32(temp[0]),
y = Convert.ToInt32(temp[1]),
z = Convert.ToInt32(temp[2]),
deadEnd = 0,
deadEndPoints = string.Empty
});
}
}
sr.Close();
sr.Dispose();
}
}
public static List <Structs.BasicStructs.Point> CreateTarget(List <TargetsCoordinates> lstTargetsCoordinates)
{
//Efetua a leitura do modelo da "Sequência X"
string strucFull = string.Empty; // "1 2 3 6 5 4 7 8 9 18 17 16 13 10 11 12 15 14 23 20 21 24 27 26 25 22 19";
//string[] struc = strucFull.Split(' '); //Quebra a linha em posições na array atravéz do espaço
//struc = struc.Where(x => !string.IsNullOrEmpty(x)).ToArray(); //Remove os espaços em branco, deixa estrutura somente com posições válidas
string[] struc = new string[lstTargetsCoordinates.Count];
int j = 0;
foreach (TargetsCoordinates item in lstTargetsCoordinates)
{
struc[j++] = item.value.ToString();
}
//Lê o arquivo sample de geração das coordenadas
string line;
List <Structs.BasicStructs.Point> coord = new List <Structs.BasicStructs.Point>();
ExtendedStreamReader file = new ExtendedStreamReader(AppDomain.CurrentDomain.BaseDirectory + @"\coord" + Directory.FileExtension, Config.CurrentGuid, false);
while ((line = file.ReadLine()) != null)
{
string[] temp = line.Split(' ');
temp = temp.Where(x => !string.IsNullOrEmpty(x)).ToArray();
coord.Add(new Structs.BasicStructs.Point()
{
x = Convert.ToInt16(temp[0]), y = Convert.ToInt16(temp[1]), z = Convert.ToInt16(temp[2])
});
}
file.Close();
//Incrimento inicial das posições do cubo x,y,z
List <Point> points = new List <Point>(); //Uma lista encadeada do tipo PointCube
for (int i = 0; i < coord.Count(); i++)
{
int pos = Convert.ToInt16(struc[i]) - 1;
Point point = new Point()
{
x = coord[pos].x, y = coord[pos].y, z = coord[pos].z
};
points.Add(point);
GICO.WriteLine(Config.CurrentGuid, String.Format("{0},{1},{2}", points[i].x, points[i].y, points[i].z));
}
//Cria um cadeia de simulação
GCPS.chain = new Structs.BasicStructs.Chain();
foreach (Point item in points)
{
GCPS.chain.r.Add(new Structs.BasicStructs.Point()
{
x = item.x,
y = item.y,
z = item.z,
deadEnd = 0,
deadEndPoints = string.Empty,
neighbors = new Structs.BasicStructs.Neighbor[6],
e = new List <TypeE>()
});
}
return(GCPS.chain.r);
}
private void SheetEvolutionValueMediumOfEnergy(ref XLWorkbook workbook)
{
string sheetName = "Evolution Energy";
string mediumValuesOfEnergy = "EvolutionEnergy.dat";
var worksheet01 = workbook.Worksheets.Add(sheetName);
//DADOS
string line;
List <string> lines = new List <string>();
using (ExtendedStreamReader file = new ExtendedStreamReader(dirWebExcel + @"\" + mediumValuesOfEnergy, this.param.dataToProcess.Guid, false))
{
while ((line = file.ReadLine()) != null)
{
if (String.IsNullOrEmpty(line))
{
break;
}
lines.Add(line);
}
file.Close();
file.Dispose();
}
//FIM DADOS
//HEADER
worksheet01.Cell("A1").Value = sheetName;
//INFOS
string comment = string.Empty;
double value = 0;
int i = 0;
for (i = 0; i < 5; i++)
{
string[] temp = lines[i].Split(':');
comment = Convert.ToString(temp[0]);
worksheet01.Cell("A" + (i + 2)).Value = comment;
try
{
value = Convert.ToDouble(temp[1]);
worksheet01.Cell("B" + (i + 2)).Value = value;
}
catch
{
string valueStr = temp[1];
worksheet01.Cell("B" + (i + 2)).Value = valueStr;
}
}
//DATA
worksheet01.Cell("A7").Value = "idx";
worksheet01.Cell("B7").Value = "MCStep";
worksheet01.Cell("C7").Value = "E";
long mcstep = 0;
double e = 0;
long idx = 0;
i++; //para pular HEADER do arquivo que já foi escrito acima (LINHA 7 do EXCEL)
for (i = i; i < lines.Count; i++)
{
string[] temp = lines[i].Split('\t');
idx = Convert.ToInt32(temp[0]);
mcstep = Convert.ToInt32(temp[1]);
e = Convert.ToDouble(temp[2]);
worksheet01.Cell("A" + (i + 2)).Value = idx;
worksheet01.Cell("B" + (i + 2)).Value = mcstep;
worksheet01.Cell("C" + (i + 2)).Value = e;
}
lines = null;
//FIM DATASHEET
}
private void SheetTrajectory(ref XLWorkbook workbook)
{
// This is invariant
NumberFormatInfo format = new NumberFormatInfo();
// Set the 'splitter' for thousands
format.NumberGroupSeparator = ".";
// Set the decimal seperator
format.NumberDecimalSeparator = ",";
string sheetName = "Trajectory";
var worksheet01 = workbook.Worksheets.Add(sheetName);
int numberLines = ExtendedStreamReader.LinesOfFile(dirServerDebug + @"\" + debugFile);
//DADOS
string line;
List <Trajectory> trajectory = new List <Trajectory>();
int _MCStep = 0;
using (ExtendedStreamReader file = new ExtendedStreamReader(dirServerDebug + @"\" + debugFile, this.param.dataToProcess.Guid, this.param.dataToProcess.crypt))
{
double rg = 0; //Calculo acumulado do Raio de GIração
int cont = 0; //Contador
//int lastMove = 0; //valor do último movimento
int contAdd = 1; //contador adicional
while ((line = file.ReadLine()) != null)
{
if (String.IsNullOrEmpty(line))
{
break;
}
if (cont > 0)
{
string[] col = line.Split('\t');
int numberMov = ConvertCustom.ToInt32(col[0]);
if (numberMov < (delta * contAdd) + 1)
{
rg += double.Parse(col[3], format); //coluna no qual contêm valor do raio de giração
_MCStep = ConvertCustom.ToInt32(col[0]);
}
else
{
double value = ((double)1 / delta) * rg;
trajectory.Add(new Trajectory()
{
MCStep = _MCStep, rg = value
});
contAdd++;
rg = 0;
rg += Convert.ToDouble(col[3]); //coluna no qual contêm valor do raio de giração
}
}
cont++;
}
file.Close();
file.Dispose();
}
//FIM DADOS
//DATASHEET
worksheet01.Cell("A1").Value = sheetName;
worksheet01.Cell("A2").Value = "lines";
worksheet01.Cell("B2").Value = numberLines;
worksheet01.Cell("A3").Value = "MCSteps";
worksheet01.Cell("B3").Value = MCSteps;
worksheet01.Cell("A4").Value = "delta";
worksheet01.Cell("B4").Value = delta;
worksheet01.Cell("A5").Value = "idx";
worksheet01.Cell("B5").Value = "MCSteps";
worksheet01.Cell("C5").Value = "SUM((1 / delta) * md)";
for (int i = 0; i < trajectory.Count; i++)
{
double value = trajectory[i].rg;
_MCStep = trajectory[i].MCStep;
worksheet01.Cell("A" + (i + 6)).Value = i;
worksheet01.Cell("B" + (i + 6)).Value = _MCStep;
worksheet01.Cell("C" + (i + 6)).Value = value;
}
}
private void SheetDistribution(ref XLWorkbook workbook)
{
// This is invariant
NumberFormatInfo format = new NumberFormatInfo();
// Set the 'splitter' for thousands
format.NumberGroupSeparator = ".";
// Set the decimal seperator
format.NumberDecimalSeparator = ",";
string sheetName = "Distribution";
string fileName = "Distribution.dat";
string mask = "";
var worksheet01 = workbook.Worksheets.Add(sheetName);
//DADOS
string line;
List <string> lines = new List <string>();
using (ExtendedStreamReader file = new ExtendedStreamReader(dirWebExcel + @"\" + fileName, this.param.dataToProcess.Guid, false))
{
while ((line = file.ReadLine()) != null)
{
if (String.IsNullOrEmpty(line))
{
break;
}
lines.Add(line);
}
file.Close();
file.Dispose();
}
//FIM DADOS
//HEADER
worksheet01.Cell("A1").Value = sheetName;
worksheet01.Cell("B1").Value = mask;
worksheet01.Cell("C1").Value = mask;
worksheet01.Cell("D1").Value = "idx";
worksheet01.Cell("E1").Value = "mcStep";
worksheet01.Cell("F1").Value = "rg2";
worksheet01.Cell("G1").Value = "rg2(accumulated)";
worksheet01.Cell("H1").Value = "<rg2>";
worksheet01.Cell("I1").Value = "e";
worksheet01.Cell("J1").Value = "e(accumulated)";
worksheet01.Cell("K1").Value = "<e>";
worksheet01.Cell("L1").Value = "U";
worksheet01.Cell("M1").Value = "U(accumulated)";
worksheet01.Cell("N1").Value = "<U>";
//INFOS
string comment = string.Empty;
double value = 0;
int i = 0;
//DATA
long idx, mcstep = 0;
double rg, U, eE, eRG, eU, e, aE, aU, aRG;
rg = U = eE = eRG = eU = e = aE = aU = aRG = 0;
//PRIMEIRA PARTE COM HEADER
for (i = 0; i < 8; i++)
{
string[] temp = lines[i].Split(':');
comment = ConvertCustom.ToString(temp[0]);
worksheet01.Cell("A" + (i + 2)).Value = comment;
try
{
value = ConvertCustom.ToDouble(temp[1]);
worksheet01.Cell("B" + (i + 2)).Value = value;
}
catch (FormatException)
{
string strValue = Convert.ToString(temp[1]);
worksheet01.Cell("B" + (i + 2)).Value = strValue;
}
string[] tempResult = lines[i + 9].Split('\t');
idx = ConvertCustom.ToInt32(tempResult[0]);
mcstep = ConvertCustom.ToInt32(tempResult[1]);
rg = double.Parse(tempResult[2], format);
aRG = double.Parse(tempResult[3], format);
eRG = double.Parse(tempResult[4], format);
e = double.Parse(tempResult[5], format);
aE = double.Parse(tempResult[6], format);
eE = double.Parse(tempResult[7], format);
U = double.Parse(tempResult[8], format);
aU = double.Parse(tempResult[9], format);
eU = double.Parse(tempResult[10], format);
worksheet01.Cell("C" + (i + 2)).Value = mask;
worksheet01.Cell("D" + (i + 2)).Value = idx;
worksheet01.Cell("E" + (i + 2)).Value = mcstep;
worksheet01.Cell("F" + (i + 2)).Value = rg;
worksheet01.Cell("G" + (i + 2)).Value = aRG;
worksheet01.Cell("H" + (i + 2)).Value = eRG;
worksheet01.Cell("I" + (i + 2)).Value = e;
worksheet01.Cell("J" + (i + 2)).Value = aE;
worksheet01.Cell("K" + (i + 2)).Value = eE;
worksheet01.Cell("L" + (i + 2)).Value = U;
worksheet01.Cell("M" + (i + 2)).Value = aU;
worksheet01.Cell("N" + (i + 2)).Value = eU;
}
//SEGUNDA PARTE
for (int j = i; j < (lines.Count() - 9); j++)
{
worksheet01.Cell("A" + (j + 2)).Value = mask;
worksheet01.Cell("B" + (j + 2)).Value = mask;
worksheet01.Cell("C" + (j + 2)).Value = mask;
string[] tempResult = lines[j + 9].Split('\t');
idx = ConvertCustom.ToInt32(tempResult[0]);
mcstep = ConvertCustom.ToInt32(tempResult[1]);
rg = double.Parse(tempResult[2], format);
aRG = double.Parse(tempResult[3], format);
eRG = double.Parse(tempResult[4], format);
e = double.Parse(tempResult[5], format);
aE = double.Parse(tempResult[6], format);
eE = double.Parse(tempResult[7], format);
U = double.Parse(tempResult[8], format);
aU = double.Parse(tempResult[9], format);
eU = double.Parse(tempResult[10], format);
worksheet01.Cell("D" + (j + 2)).Value = idx;
worksheet01.Cell("E" + (j + 2)).Value = mcstep;
worksheet01.Cell("F" + (j + 2)).Value = rg;
worksheet01.Cell("G" + (j + 2)).Value = aRG;
worksheet01.Cell("H" + (j + 2)).Value = eRG;
worksheet01.Cell("I" + (j + 2)).Value = e;
worksheet01.Cell("J" + (j + 2)).Value = aE;
worksheet01.Cell("K" + (j + 2)).Value = eE;
worksheet01.Cell("L" + (j + 2)).Value = U;
worksheet01.Cell("M" + (j + 2)).Value = aU;
worksheet01.Cell("N" + (j + 2)).Value = eU;
}
lines = null;
//FIM DATASHEET
}
public void EvolutionValueMediumOfEnergy()
{
string readerFile = dirBaseWeb.FullName() + this.param.dataToProcess.Guid + @"\Result\Debug.dat";
string writerFile = @dirBaseWeb.FullName() + this.param.dataToProcess.Guid + @"\Result\EvolutionEnergy.dat";
//Data
string line;
List <ColsForEnergy> energy = new List <ColsForEnergy>();
using (ExtendedStreamReader souceFile = new ExtendedStreamReader(readerFile,
this.param.dataToProcess.Guid, false))
{
ExtendedStreamWriter destinationFile = new ExtendedStreamWriter(writerFile, false,
this.param.dataToProcess.Guid, false);
string[] cols = null;
int i = 0;
while ((line = souceFile.ReadLine()) != null)
{
if (String.IsNullOrEmpty(line))
{
break;
}
//pulas cabeçalho e o número de discartes
if (i < 1)
{
for (int k = 0; k < this.valueDiscard; k++)
{
line = souceFile.ReadLine();
}
}
else
{
cols = line.Split('\t').ToArray();
Int32 _mcSteps = Convert.ToInt32(cols[0]);
double _newE = Convert.ToDouble(cols[2]);
energy.Add(new ColsForEnergy()
{
mcSteps = _mcSteps, e = _newE
});
//pula o Delta
for (int k = 0; k < this.delta; k++)
{
line = souceFile.ReadLine();
}
}
i++;
}
souceFile.Close();
//souceFile = null;
//Write result file
destinationFile.WriteLine("mcStep: {0}", this.mcSteps);
destinationFile.WriteLine("valueDiscard: {0}", this.valueDiscard);
destinationFile.WriteLine("delta: {0}", this.delta);
destinationFile.WriteLine("temperature: {0}", param.dataToProcess.temperature);
destinationFile.WriteLine("model: {0}", TranslateModel(param.dataToProcess.modelType));
destinationFile.WriteLine("idx" + "\t" + "_mcSteps" + "\t" + "energy");
for (int z = 0; z < energy.Count(); z++)
{
destinationFile.WriteLine(z + "\t" + energy[z].mcSteps + "\t" + energy[z].e);
}
destinationFile.Flush();
destinationFile.Close();
souceFile.Dispose();
}
}
public void ConfigurationOutPut()
{
string[] files = Directory.GetFilesOfDir(dirBaseWeb.FullName() + this.param.dataToProcess.Guid + @"\Result", "Trajectory*.dat");
Array.Sort <string>(files);
Array.Reverse(files);
string readerLastFile = files[0];
Array.Sort <string>(files);
//Data
string line;
List <string> configurations = new List <string>();
//FILEs - lê arquivo por arquivo efetuando o SALTO de MCTSP efetuado
string readerFirstFile = string.Empty;
ExtendedStreamReader souceFirstFile;
int i = 0;
for (int numberOfFile = 0; numberOfFile < files.Length; numberOfFile++)
{
readerFirstFile = files[numberOfFile];
using (souceFirstFile = new ExtendedStreamReader(readerFirstFile,
this.param.dataToProcess.Guid, false))
{
bool readHeader = false;
while ((line = souceFirstFile.ReadLine()) != null)
{
if (String.IsNullOrEmpty(line))
{
break;
}
//cabeçalho do primeiro arquivo
if (!readHeader)
{
configurations.Add(line);
readHeader = true;
line = souceFirstFile.ReadLine();
}
if (i == 0)
{
//for (int k = 0; k < this.valueDiscard; k++)
//{
// line = souceFirstFile.ReadLine();
//}
configurations.Add(line);
}
else
{
//if (i == param.output.configurationJumpStep)
//{
// i = 0;
configurations.Add(line);
//}
}
i++;
}
souceFirstFile.Close();
souceFirstFile.Dispose();
}
}
//LAST FILE
string writerConfigurationFile = dirBaseWeb.FullName() + this.param.dataToProcess.Guid + @"\Result\Configuration.dat";
ExtendedStreamWriter destinationFile = new ExtendedStreamWriter(writerConfigurationFile, false,
this.param.dataToProcess.Guid, false);
line = string.Empty;
string last = File.ReadLastLineOfFile(readerLastFile);
configurations.Add(last);
souceFirstFile = null;
//Write result file
foreach (string data in configurations)
{
destinationFile.WriteLine(data);
}
destinationFile.Flush();
destinationFile.Close();
//Após consolidar arquivo de CONFIGURATION.DAT, os arquivos de TRAJETORY* devem ser descartados
foreach (string file in files)
{
File.Delete(file);
}
}
public void LoadConfigurationOutPutForOrigin()
{
GICO.WriteLine(String.Format(" Output: LoadConfigurationOutPutToOrigin: Delete..."));
////Delete IF EXIST
//using (GridProteinFoldingEntities ctx = new GridProteinFoldingEntities())
//{
// ctx.Database.ExecuteSqlCommand("DELETE FROM OUTPUT WHERE guid= {0}", param.dataToProcess.Guid);
//}
string readerFile = dirBaseWeb.FullName() + this.param.dataToProcess.Guid + @"\Result\Configuration.dat";
using (ExtendedStreamReader souceFile = new ExtendedStreamReader(readerFile,
this.param.dataToProcess.Guid, false))
{
string line;
int i = 0;
GICO.WriteLine(String.Format(" Output: LoadConfigurationOutPutToOrigin: Insert..."));
while ((line = souceFile.ReadLine()) != null)
{
if (String.IsNullOrEmpty(line))
{
break;
}
//pulas cabeçalho e o número de discartes
if (i == 0)
{
line = souceFile.ReadLine();
}
string[] data = line.Split('\t').ToArray();
Int32 mcStep = 0;
int order = 0;
int count = 0;
using (TransactionScope scope = new TransactionScope())
{
GridProteinFoldingEntities ctx = null;
try
{
ctx = new GridProteinFoldingEntities();
Entities.Internal.Configuration configuration = null;
for (int j = 0; j < data.Length; j++)
{
if (j == 0)
{
mcStep = Convert.ToInt32(data[j]); j++;
}
configuration = new Entities.Internal.Configuration();
configuration.process_guid = this.param.dataToProcess.Guid;
configuration.mcStep = mcStep;
configuration.order = order;
configuration.x = Convert.ToInt32(data[j]); j++;
configuration.y = Convert.ToInt32(data[j]); j++;
configuration.z = Convert.ToInt32(data[j]);
order++;
++count;
ctx = AddToContext(ctx, configuration, count, 100, true);
//ctx.Configuration.Add(configuration);
}
if (configuration != null)
{
ctx.SaveChanges();
configuration = null;
}
}
finally
{
if (ctx != null)
{
ctx.Dispose();
}
}
scope.Complete();
}
i++;
}
souceFile.Close();
//souceFile = null;
souceFile.Dispose();
}
}
public void Distribution()
{
try
{
string readerFile = dirBaseWeb.FullName() + this.param.dataToProcess.Guid + @"\Result\Debug.dat";
string writerFile = dirBaseWeb.FullName() + this.param.dataToProcess.Guid + @"\Result\Distribution.dat";
Guid guid = param.dataToProcess.Guid;
int isem = param.dataToProcess.isem;
int sitios = param.dataToProcess.totalSitio;
//Data
string line;
List <ColsForDepedentModel> md = new List <ColsForDepedentModel>();
using (ExtendedStreamReader souceFile = new ExtendedStreamReader(readerFile,
this.param.dataToProcess.Guid, false))
{
ExtendedStreamWriter destinationFile = new ExtendedStreamWriter(writerFile, false,
this.param.dataToProcess.Guid, false);
string[] cols = null;
int i = 0;
while ((line = souceFile.ReadLine()) != null)
{
if (String.IsNullOrEmpty(line))
{
break;
}
//pulas cabeçalho & faz o discarte o número de discartes
if (i == 0)
{
for (int k = 0; k < this.valueDiscard; k++)
{
line = souceFile.ReadLine();
}
}
else
{
cols = line.Split('\t').ToArray();
Int32 _mcSteps = Convert.ToInt32(cols[0]);
double _rg = Convert.ToDouble(cols[3]);
double _e = Convert.ToDouble(cols[2]);
double _U = Convert.ToDouble(cols[8]);
md.Add(new ColsForDepedentModel()
{
mcSteps = _mcSteps, rg = _rg, e = _e, U = _U
});
//pula o Delta
for (int k = 0; k < this.delta; k++)
{
line = souceFile.ReadLine();
}
}
i++;
}
souceFile.Close();
//souceFile = null;
//Write result file
destinationFile.WriteLine("simulation id: {0}", guid.ToString());
destinationFile.WriteLine("isem: {0}", isem);
destinationFile.WriteLine("sitios: {0}", sitios);
destinationFile.WriteLine("model: {0}", TranslateModel(param.dataToProcess.modelType));
destinationFile.WriteLine("mcStep: {0}", this.mcSteps);
destinationFile.WriteLine("temperature: {0}", param.dataToProcess.temperature);
destinationFile.WriteLine("valueDiscard: {0}", this.valueDiscard);
destinationFile.WriteLine("delta: {0}", this.delta);
destinationFile.WriteLine("idx\t mcSteps\t rg2\t rg2(accumulated)\t <rg2>\t e\t e(accumulated)\t <e>\t U\t U(accumulated)\t <U>");
double aRG2, eRG2, previousRG2, actualRG2;
aRG2 = eRG2 = previousRG2 = actualRG2 = 0;
double aE, eE, previousE, actualE;
aE = eE = previousE = actualE = 0;
double aU, eU, previousU, actualU;
aU = eU = previousU = actualU = 0;
Int64 idx = 0;
for (int z = 0; z < md.Count(); z++)
{
idx = (z + 1);
//Acumulado
aRG2 += md[z].rg;
aE += md[z].e;
aU += md[z].U;
//Evolução do RAIO DE GIRAÇÃO
actualRG2 = md[z].rg;
eRG2 = aRG2 / idx;
previousRG2 = eRG2;
//Evolução do E
actualE = md[z].e;
eE = aE / idx;
previousE = eE;
//Evolução do U
actualU = md[z].U;
eU = aU / idx;
previousE = eU;
destinationFile.WriteLine(z + "\t" + md[z].mcSteps + "\t" + actualRG2 + "\t" + aRG2 + "\t" + eRG2 + "\t" + actualE + "\t" + aE + "\t" + eE + "\t" + actualU + "\t" + aU + "\t" + eU);
}
destinationFile.Flush();
destinationFile.Close();
souceFile.Dispose();
}
}
catch (Exception ex)
{
GICO.WriteLine(ex);
throw;
}
}
public static List <BasicStructs.Point> DoPoc_NativeStructToGhostStruct()
{
Console.WriteLine("DoPoc_NativeStructToGhostStruct");
//Representa a estrutura do CUBO FANTASMA
List <BasicStructs.Point> ghostCube = new List <BasicStructs.Point>();
//Representa qual linha foi escolhida, no arquivo de configuração
int[] seqToMakeNewStruct = new int[27];
//Representa a nova estrutura a ser gerada
List <BasicStructs.Point> newStruct = new List <BasicStructs.Point>();
// Observações:
//cfg51704.dat : arquivo da sequencia posicional dos 27 monomeros
//cuboFantasma.dat : coordenadas(x, y, z) dos 27 vértices do cubo 3X3X3
//Path do local de execução do executável
string path = System.Environment.CurrentDirectory;
ExtendedStreamReader ghostCubeFile = new ExtendedStreamReader(path + @"\cuboFantasma.dat", new Guid(), false);
//Leitura das COORDENADAS BASICAS para os 27 monomeros(coordenadas estabelecidas arbitrariamente, mas fixas)
string line = string.Empty;
while ((line = ghostCubeFile.ReadLine()) != null)
{
string[] data = line.Split('\t'); //separa informações através do caracter TAB
data = data.Where(x => !string.IsNullOrEmpty(x)).ToArray(); //limpa eventuais espaços em branco
BasicStructs.Point temp = new BasicStructs.Point();
temp.x = Convert.ToInt16(data[0]);
temp.y = Convert.ToInt16(data[1]);
temp.z = Convert.ToInt16(data[2]);
ghostCube.Add(temp);
}
ghostCubeFile.Close();
//ID da estrutura a ser gerada
int idOfConfig = 3; //equivale arquivo 00003.dat
//Le a linha da estrutura escolhida
string[] selectedLine = new string[27];
selectedLine = System.IO.File.ReadLines(path + @"\cfg51704.dat").Skip(idOfConfig - 1).Take(1).First().Split(' '); //Lê linha escolhida diretamente do arquivo
selectedLine = selectedLine.Where(x => !string.IsNullOrEmpty(x)).ToArray(); //limpa eventuais espaços em branco
Console.Write("De: ");
for (int i = 0; i < selectedLine.Count(); i++)
{
Console.Write("{0} ", selectedLine[i]);
}
Console.WriteLine();
//Gera mapeamento da nova estrutura
int ik = 0;
foreach (string item in selectedLine)
{
seqToMakeNewStruct[ik] = Convert.ToInt16(item);
ik++;
}
//Guardar as coordenadas para cada monomero da ie configuracao desejada
for (int ipos = 0; ipos < 27; ipos++)
{
BasicStructs.Point temp = new BasicStructs.Point();
int imon = seqToMakeNewStruct[ipos] - 1;
temp.x = ghostCube[imon].x;
temp.y = ghostCube[imon].y;
temp.z = ghostCube[imon].z;
newStruct.Add(temp);
}
Console.WriteLine("Para: ");
//Print a nova ESTRUTURA
for (int ipos = 0; ipos < 27; ipos++)
{
Console.WriteLine("{0} {1} {2}", newStruct[ipos].x, newStruct[ipos].y, newStruct[ipos].z);
}
return(newStruct);
}
private void SheetsHistogram(ref XLWorkbook workbook)
{
string sheetName = string.Empty;
//Recupera a quantidade de arquivos existentes
string[] dir = Directory.GetFiles(dirServerHistogram);
if (dir.Count() > 0)
{
foreach (string file in dir)
{
int posBar = file.LastIndexOf(@"\", StringComparison.Ordinal);
int len = file.Count();
string fileName = file.Substring(posBar, len - posBar).Replace(@"\", "");
switch (fileName)
{
case "fileRealHistogramEndToEndDistance.dat":
sheetName = "EndToEnd distance";
break;
case "fileRealHistogramRadiuosOfGyration.dat":
sheetName = "Radiuos of gyration";
break;
default:
sheetName = file;
break;
}
var worksheet01 = workbook.Worksheets.Add(sheetName);
//DADOS
string line;
List <string> lines = new List <string>();
using (ExtendedStreamReader stream = new ExtendedStreamReader(dirServerHistogram + @"\" + fileName, this.param.dataToProcess.Guid, this.param.dataToProcess.crypt))
{
while ((line = stream.ReadLine()) != null)
{
if (String.IsNullOrEmpty(line))
{
break;
}
lines.Add(line);
}
stream.Close();
stream.Dispose();
}
//FIM DADOS
//DATASHEET
for (int i = 0; i < lines.Count; i++)
{
string[] values = lines[i].Split('\t');
for (int j = 0; j < values.Count(); j++)
{
worksheet01.Cell(Convert.ToChar(65 + j).ToString() + (i + 1)).Value = values[j];
}
}
lines = null;
//FIM DATASHEET
}
}
}