//constructors
public CosmicItem(ExtendedBinaryReader reader)
{
if (reader == null)
{
return;
}
ID = reader.ReadAsciiString();
SaAltAllele = reader.ReadAsciiString();
AltAllele = SupplementaryAnnotationUtilities.ReverseSaReducedAllele(SaAltAllele);
RefAllele = reader.ReadAsciiString();
Gene = reader.ReadAsciiString();
SampleCount = reader.ReadOptNullableInt32();
var countStudy = reader.ReadOptInt32();
if (countStudy > 0)
{
Studies = new HashSet <CosmicStudy>();
}
for (var i = 0; i < countStudy; i++)
{
Studies.Add(new CosmicStudy(reader));
}
}
public void Read(ExtendedBinaryReader reader)
{
ExacCoverage = reader.ReadOptInt32();
ExacAllAn = reader.ReadOptNullableInt32();
ExacAfrAn = reader.ReadOptNullableInt32();
ExacAmrAn = reader.ReadOptNullableInt32();
ExacEasAn = reader.ReadOptNullableInt32();
ExacFinAn = reader.ReadOptNullableInt32();
ExacNfeAn = reader.ReadOptNullableInt32();
ExacOthAn = reader.ReadOptNullableInt32();
ExacSasAn = reader.ReadOptNullableInt32();
ExacAllAc = reader.ReadOptNullableInt32();
ExacAfrAc = reader.ReadOptNullableInt32();
ExacAmrAc = reader.ReadOptNullableInt32();
ExacEasAc = reader.ReadOptNullableInt32();
ExacFinAc = reader.ReadOptNullableInt32();
ExacNfeAc = reader.ReadOptNullableInt32();
ExacOthAc = reader.ReadOptNullableInt32();
ExacSasAc = reader.ReadOptNullableInt32();
}
public void Read(ExtendedBinaryReader reader)
{
AncestralAllele = reader.ReadAsciiString();
OneKgAllAn = reader.ReadOptNullableInt32();
OneKgAfrAn = reader.ReadOptNullableInt32();
OneKgAmrAn = reader.ReadOptNullableInt32();
OneKgEasAn = reader.ReadOptNullableInt32();
OneKgEurAn = reader.ReadOptNullableInt32();
OneKgSasAn = reader.ReadOptNullableInt32();
OneKgAllAc = reader.ReadOptNullableInt32();
OneKgAfrAc = reader.ReadOptNullableInt32();
OneKgAmrAc = reader.ReadOptNullableInt32();
OneKgEasAc = reader.ReadOptNullableInt32();
OneKgEurAc = reader.ReadOptNullableInt32();
OneKgSasAc = reader.ReadOptNullableInt32();
}