private PromoterProperties getPromoterReaction(ExpressionModule em, int id)
{
Logger.Log("Device::getPromoterReaction(" + em.ToString() + ", " + id + ")", Logger.Level.TRACE);
PromoterProperties prom = new PromoterProperties();
prom.energyCost = _energyPerBasePair * em.getSize();
//promoter only
//prom.energyCost = _energyPerBasePair*em.getBioBricks().First.Value.getSize();
LinkedList <BioBrick> bricks = em.getBioBricks();
//TODO fix this: create good properties' name
prom.name = _internalName + id;
PromoterBrick p = bricks.First.Value as PromoterBrick;
prom.formula = p.getFormula();
prom.beta = p.getBeta();
bricks.RemoveFirst();
prom.products = getProductsFromBiobricks(bricks);
TerminatorBrick tb = bricks.First.Value as TerminatorBrick;
prom.terminatorFactor = tb.getTerminatorFactor();
bricks.RemoveFirst();
if (bricks.Count != 0)
{
Logger.Log("Device::getPromoterReaction Warning: bricks.Count =" + bricks.Count, Logger.Level.TRACE);
}
return(prom);
}
private PromoterProperties getPromoterReaction(ExpressionModule em, int id)
{
Logger.Log("Device::getPromoterReaction("+em.ToString()+", "+id+")", Logger.Level.TRACE);
PromoterProperties prom = new PromoterProperties();
prom.energyCost = _energyPerBasePair*em.getSize();
//promoter only
//prom.energyCost = _energyPerBasePair*em.getBioBricks().First.Value.getSize();
LinkedList<BioBrick> bricks = em.getBioBricks();
//TODO fix this: create good properties' name
prom.name = _internalName + id;
PromoterBrick p = bricks.First.Value as PromoterBrick;
prom.formula = p.getFormula();
prom.beta = p.getBeta();
bricks.RemoveFirst();
prom.products = getProductsFromBiobricks(bricks);
TerminatorBrick tb = bricks.First.Value as TerminatorBrick;
prom.terminatorFactor = tb.getTerminatorFactor();
bricks.RemoveFirst();
if(bricks.Count != 0) {
Logger.Log("Device::getPromoterReaction Warning: bricks.Count ="+bricks.Count, Logger.Level.TRACE);
}
return prom;
}