//JAVA TO C# CONVERTER TODO TASK: Most Java annotations will not have direct .NET equivalent attributes:
//ORIGINAL LINE: @Requires({"name != null", "! ( location == null && output == null )", "! ( enableOnTheFlyIndexing && location == null )"}) protected IndexingVariantContextWriter(final String name, final File location, final OutputStream output, final net.sf.samtools.SAMSequenceDictionary refDict, final boolean enableOnTheFlyIndexing)
//JAVA TO C# CONVERTER WARNING: 'final' parameters are not allowed in .NET:
protected internal IndexingVariantContextWriter(string name, File location, OutputStream output, SAMSequenceDictionary refDict, bool enableOnTheFlyIndexing)
{
outputStream = output;
this.name = name;
this.refDict = refDict;
if (enableOnTheFlyIndexing)
{
try
{
idxStream = new LittleEndianOutputStream(new FileOutputStream(Tribble.indexFile(location)));
//System.out.println("Creating index on the fly for " + location);
indexer = new DynamicIndexCreator(IndexFactory.IndexBalanceApproach.FOR_SEEK_TIME);
indexer.initialize(location, indexer.defaultBinSize());
positionalOutputStream = new PositionalOutputStream(output);
outputStream = positionalOutputStream;
}
catch (IOException ex)
{
// No matter what we keep going, since we don't care if we can't create the index file
idxStream = null;
indexer = null;
positionalOutputStream = null;
}
}
}
//JAVA TO C# CONVERTER TODO TASK: Most Java annotations will not have direct .NET equivalent attributes:
//ORIGINAL LINE: @Requires({"name != null", "! ( location == null && output == null )", "! ( enableOnTheFlyIndexing && location == null )"}) protected IndexingVariantContextWriter(final String name, final File location, final OutputStream output, final net.sf.samtools.SAMSequenceDictionary refDict, final boolean enableOnTheFlyIndexing)
//JAVA TO C# CONVERTER WARNING: 'final' parameters are not allowed in .NET:
protected internal IndexingVariantContextWriter(string name, File location, OutputStream output, SAMSequenceDictionary refDict, bool enableOnTheFlyIndexing)
{
outputStream = output;
this.name = name;
this.refDict = refDict;
if (enableOnTheFlyIndexing)
{
try
{
idxStream = new LittleEndianOutputStream(new FileOutputStream(Tribble.indexFile(location)));
//System.out.println("Creating index on the fly for " + location);
indexer = new DynamicIndexCreator(IndexFactory.IndexBalanceApproach.FOR_SEEK_TIME);
indexer.initialize(location, indexer.defaultBinSize());
positionalOutputStream = new PositionalOutputStream(output);
outputStream = positionalOutputStream;
}
catch (IOException ex)
{
// No matter what we keep going, since we don't care if we can't create the index file
idxStream = null;
indexer = null;
positionalOutputStream = null;
}
}
}
