public static void initDicom()
{
var dict = new DicomDictionary();
dict.Load(@".\Assets\dicom\DICOM Dictionary.xml", DicomDictionaryFormat.XML);
DicomDictionary.Default = dict;
}
public void Load_CompressedFile_LoadedTagFound()
{
var dict = new DicomDictionary();
dict.Load(TestData.Resolve("minimumdict.xml.gz"), DicomDictionaryFormat.XML);
var expected = DicomVR.CS;
var actual = dict[DicomTag.FileSetID].ValueRepresentations.Single();
Assert.Equal(expected, actual);
}
// Use this for initialization
void Start()
{
Unzip("Genomics", false);
Debug.Log("Loading DICOM DICT");
var dict = new DicomDictionary();
dict.Load(Application.dataPath + "/StreamingAssets/Dictionaries/DICOM Dictionary.xml", DicomDictionaryFormat.XML);
DicomDictionary.Default = dict;
annotationPath = Path.Combine(Application.persistentDataPath, "annotations.json");
if (File.Exists(annotationPath))
{
annotations = JsonUtility.FromJson <AnnotationCollection>(File.ReadAllText(annotationPath));
Debug.Log("Loaded " + annotations.annotations.Count + " annotations");
}
var meshMarkerPath = Path.Combine(Application.persistentDataPath, "MeshMarkers");
if (Directory.Exists(meshMarkerPath))
{
meshMarkers = Directory.GetFiles(meshMarkerPath, "*.*", SearchOption.AllDirectories);
}
var path = Unzip("DICOM");
Unzip("Volumes", false);
var offset = 0;
directoryMap = new Dictionary <GameObject, DicomDirectoryRecord>();
rootDirectoryMap = new Dictionary <DicomDirectoryRecord, string>();
openedItems = new Dictionary <GameObject, bool>();
var directories = Directory.GetDirectories(path);
if (directories.Length == 0)
{
status.text = "ERROR: No directories found!";
return;
}
status.text = "Loading...";
foreach (var directory in Directory.GetDirectories(path))
{
var directoryName = Path.GetFileName(directory);
Debug.Log("--DIRECTORY--" + directoryName);
var dd = DicomDirectory.Open(Path.Combine(directory, "DICOMDIR"));
rootDirectoryMap[dd.RootDirectoryRecord] = directory;
var tex = GetTexture2DForRecord(dd.RootDirectoryRecord);
var quad = Instantiate(quadPrefab, filebrowser);
quad.GetComponent <Renderer>().material.mainTexture = tex;
quad.transform.localPosition += new Vector3(offset, 0, 0);
quad.transform.Find("Canvas").Find("title").GetComponent <Text>().text = "Directory: " + directoryName;
quad.name = directory;
directoryMap[quad] = dd.RootDirectoryRecord;
openedItems[quad] = false;
quad.tag = "directory";
offset += 1;
}
recognizer = new GestureRecognizer();
recognizer.TappedEvent += Recognizer_TappedEvent;
recognizer.StartCapturingGestures();
status.text = "";
UpdateAnnotationsList();
testQuad.SetActive(false);
#if UNITY_EDITOR
testQuad.SetActive(true);
testQuad.transform.position = new Vector3(0, 0, 2);
var series = GetSeriesById("1.3.12.2.1107.5.1.4.50714.30000016083120205201500011155");
var seriesHandler = testQuad.GetComponent <OpenSeriesHandler>();
seriesHandler.record = series;
var modality = GetDicomTag(series, DicomTag.Modality);
var seriesDesc = GetDicomTag(series, DicomTag.SeriesDescription);
testQuad.name = "Series: " + modality + "\n" + seriesDesc;
Debug.Log(seriesDesc);
directoryMap[testQuad] = series;
rootDirectoryMap[series] = rootDirectoryMap[directoryMap.ElementAt(1).Value];
testQuad.GetComponent <TwoHandManipulatable>().enabled = true;
testQuad.transform.Find("3D_toggle").gameObject.SetActive(true);
testQuad.transform.Find("3D_toggle").GetComponent <InteractiveToggle>().SetSelection(true);
seriesHandler.ButtonPush("3D");
var slider = testQuad.transform.Find("zstack slider");
slider.gameObject.SetActive(true);
var sliderComponent = slider.GetComponent <SliderGestureControl>();
var n_images = series.LowerLevelDirectoryRecordCollection.Count();
sliderComponent.SetSpan(0, n_images);
sliderComponent.SetSliderValue(n_images / 2f);
testQuad.GetComponent <Renderer>().material.mainTexture = GetTexture2DForRecord(series);
var seriesId = series.Get <string>(DicomTag.SeriesInstanceUID, "no series id");
foreach (var a in annotations.annotations)
{
if (a.series == seriesId)
{
var annotation = Instantiate(annotationPrefab, testQuad.transform);
annotation.transform.localPosition = DeserializeVector(a.position, Vector3.zero);
annotation.transform.localRotation = Quaternion.Euler(DeserializeVector(a.rotation, Vector3.zero));
annotation.transform.localScale = DeserializeVector(a.scale, Vector3.one);
}
}
//WarmVolumeCache();
#endif
}