public void ValidateDnaDerivedSequenceGetReverseComplemented()
{
// Get input and expected values from xml
string expectedSequence = utilityObj.xmlUtil.GetTextValue(
Constants.DnaDerivedSequenceNode, Constants.ExpectedSequence);
string alphabetName = utilityObj.xmlUtil.GetTextValue(
Constants.DnaDerivedSequenceNode, Constants.AlphabetNameNode);
string reverseCompObj = utilityObj.xmlUtil.GetTextValue(
Constants.DnaDerivedSequenceNode, Constants.ReverseComplement);
string derivedSequence = utilityObj.xmlUtil.GetTextValue(
Constants.DnaDerivedSequenceNode, Constants.DerivedSequence);
IAlphabet alphabet = Utility.GetAlphabet(alphabetName);
// Create derived Sequence
DerivedSequence derSequence = CreateDerivedSequence(
alphabet, expectedSequence);
// Validate IndexOf() derived Sequence.
Assert.AreEqual(derivedSequence, new string(derSequence.Select(a => (char)a).ToArray()));
Assert.AreEqual(reverseCompObj, new string(derSequence.GetReverseComplementedSequence().Select(a => (char)a).ToArray()));
Console.WriteLine(
"DerivedSequenceBvtTestCases:Validation of GetReverseComplementedSequence() method of derived sequence completed successfully");
ApplicationLog.WriteLine(
"DerivedSequenceBvtTestCases:Validation of GetReverseComplementedSequence() method of derived sequence completed successfully");
}
public void TestGetReverseComplementedSequence()
{
const string sequence = "ATGCC";
const string expectedSequence = "GGCAT";
ISequence orignalSequence = new Sequence(Alphabets.DNA, sequence);
DerivedSequence deriveSequence = new DerivedSequence(orignalSequence, false, false);
string actualSequence = new string(deriveSequence.GetReverseComplementedSequence().Select(a => (char)a).ToArray());
Assert.AreEqual(expectedSequence, actualSequence);
}
public void TestGetReverseComplementedSequence()
{
const string sequence = "ATGCC";
const string expectedSequence = "GGCAT";
ISequence orignalSequence = new Sequence(Alphabets.DNA, sequence);
DerivedSequence deriveSequence = new DerivedSequence(orignalSequence, false, false);
string actualSequence = new string(deriveSequence.GetReverseComplementedSequence().Select(a => (char)a).ToArray());
Assert.AreEqual(expectedSequence, actualSequence);
}