public PeptideAnalysisData(DbPeptideAnalysis dbPeptideAnalysis)
{
Name = dbPeptideAnalysis.Name;
PeptideId = dbPeptideAnalysis.Peptide.GetId();
MinCharge = dbPeptideAnalysis.MinCharge;
MaxCharge = dbPeptideAnalysis.MaxCharge;
ExcludedMasses = ExcludedMasses.FromByteArray(dbPeptideAnalysis.ExcludedMasses);
MassAccuracy = dbPeptideAnalysis.MassAccuracy;
FileAnalyses = ImmutableSortedList <long, PeptideFileAnalysisData> .EMPTY;
}
public PeptideAnalysisData(DbPeptideAnalysis dbPeptideAnalysis)
{
Name = dbPeptideAnalysis.Name;
PeptideId = dbPeptideAnalysis.Peptide.GetId();
MinCharge = dbPeptideAnalysis.MinCharge;
MaxCharge = dbPeptideAnalysis.MaxCharge;
ExcludedMasses = ExcludedMasses.FromByteArray(dbPeptideAnalysis.ExcludedMasses);
MassAccuracy = dbPeptideAnalysis.MassAccuracy;
FileAnalyses = ImmutableSortedList<long, PeptideFileAnalysisData>.EMPTY;
}
public static DbPeptideFileAnalysis CreatePeptideFileAnalysis(ISession session, MsDataFile msDataFile, DbPeptideAnalysis dbPeptideAnalysis, ILookup <long, double> psmTimesByDataFileId)
{
var dbMsDataFile = session.Load <DbMsDataFile>(msDataFile.Id);
var startEndTime = DecideChromatogramStartEndTime(msDataFile, psmTimesByDataFileId);
return(new DbPeptideFileAnalysis
{
ChromatogramStartTime = startEndTime.Key,
ChromatogramEndTime = startEndTime.Value,
MsDataFile = dbMsDataFile,
PeptideAnalysis = dbPeptideAnalysis,
AutoFindPeak = true,
PsmCount = psmTimesByDataFileId[msDataFile.Id].Count(),
});
}
