public void Save()
{
string module = $"{_product}.{_class}.{MethodBase.GetCurrentMethod().Name}()";
try
{
var lib = new Database.Library();
lib.UpdateChemistry(ID, Name, XML, Formula);
Dirty = false;
}
catch (Exception ex)
{
new ReportError(Globals.Chem4WordV3.Telemetry, Globals.Chem4WordV3.WordTopLeft, module, ex).ShowDialog();
}
}
private void EraseLibrary_OnClick(object sender, RoutedEventArgs e)
{
string module = $"{_product}.{_class}.{MethodBase.GetCurrentMethod().Name}()";
Globals.Chem4WordV3.Telemetry.Write(module, "Action", "Triggered");
try
{
if (Globals.Chem4WordV3.LibraryNames == null)
{
Globals.Chem4WordV3.LoadNamesFromLibrary();
}
StringBuilder sb = new StringBuilder();
sb.AppendLine("This will delete all the structures from the Library");
sb.AppendLine("It will not delete any tags.");
sb.AppendLine("");
sb.AppendLine("Do you want to proceed?");
sb.AppendLine("This cannot be undone.");
Forms.DialogResult dr =
UserInteractions.AskUserYesNo(sb.ToString(), Forms.MessageBoxDefaultButton.Button2);
if (dr == Forms.DialogResult.Yes)
{
var lib = new Database.Library();
lib.DeleteAllChemistry();
Globals.Chem4WordV3.LoadNamesFromLibrary();
// Close the existing Library Pane
#if DEBUG
Debugger.Break();
#endif
//var app = Globals.Chem4WordV3.Application;
//foreach (CustomTaskPane taskPane in Globals.Chem4WordV3.CustomTaskPanes)
//{
// if (app.ActiveWindow == taskPane.Window && taskPane.Title == Constants.LibraryTaskPaneTitle)
// {
// var custTaskPane = taskPane;
// (custTaskPane.Control as LibraryHost)?.Refresh();
// }
//}
}
}
catch (Exception ex)
{
new ReportError(Globals.Chem4WordV3.Telemetry, TopLeft, module, ex).ShowDialog();
}
}
private void DeleteButton_OnClick(object sender, RoutedEventArgs e)
{
string module = $"{_product}.{_class}.{MethodBase.GetCurrentMethod().Name}()";
try
{
if (AskUserYesNo("Do you want to delete this structure from the Library?") == DialogResult.Yes)
{
var lib = new Database.Library();
lib.DeleteChemistry(((LibraryViewModel.Chemistry) this.DataContext).ID);
Globals.Chem4WordV3.LoadNamesFromLibrary();
ParentControl.MainGrid.DataContext = new LibraryViewModel();
}
}
catch (Exception ex)
{
new ReportError(Globals.Chem4WordV3.Telemetry, Globals.Chem4WordV3.WordTopLeft, module, ex).ShowDialog();
}
}
private void AddNewChemistry(IList eNewItems)
{
string module = $"{_product}.{_class}.{MethodBase.GetCurrentMethod().Name}()";
try
{
if (!_initializing)
{
var lib = new Database.Library();
foreach (Chemistry chemistry in eNewItems)
{
chemistry.ID = lib.AddChemistry(chemistry.XML, chemistry.Name, chemistry.Formula);
}
}
}
catch (Exception ex)
{
new ReportError(Globals.Chem4WordV3.Telemetry, Globals.Chem4WordV3.WordTopLeft, module, ex).ShowDialog();
}
}
public void LoadUserTagItems()
{
string module = $"{_product}.{_class}.{MethodBase.GetCurrentMethod().Name}()";
try
{
UserTagItems.Clear();
var lib = new Database.Library();
List <UserTagDTO> allTags = lib.GetAllUserTags();
foreach (var obj in allTags)
{
var tag = new UserTag();
tag.ID = obj.Id;
tag.Text = obj.Text;
UserTagItems.Add(tag);
}
}
catch (Exception ex)
{
new ReportError(Globals.Chem4WordV3.Telemetry, Globals.Chem4WordV3.WordTopLeft, module, ex).ShowDialog();
}
}
private void DeleteChemistry(IList eOldItems)
{
string module = $"{_product}.{_class}.{MethodBase.GetCurrentMethod().Name}()";
try
{
if (!_initializing)
{
var lib = new Database.Library();
foreach (Chemistry chemistry in eOldItems)
{
lib.DeleteChemistry(chemistry.ID);
}
}
}
catch (Exception ex)
{
using (var form = new ReportError(Globals.Chem4WordV3.Telemetry, Globals.Chem4WordV3.WordTopLeft, module, ex))
{
form.ShowDialog();
}
}
}
private void EraseLibrary_OnClick(object sender, RoutedEventArgs e)
{
string module = $"{_product}.{_class}.{MethodBase.GetCurrentMethod().Name}()";
Globals.Chem4WordV3.Telemetry.Write(module, "Action", "Triggered");
try
{
if (Globals.Chem4WordV3.LibraryNames == null)
{
Globals.Chem4WordV3.LoadNamesFromLibrary();
}
StringBuilder sb = new StringBuilder();
sb.AppendLine("This will delete all the structures from the Library");
//sb.AppendLine("It will not delete any tags.")
sb.AppendLine("");
sb.AppendLine("Do you want to proceed?");
sb.AppendLine("This cannot be undone.");
Forms.DialogResult dr =
UserInteractions.AskUserYesNo(sb.ToString(), Forms.MessageBoxDefaultButton.Button2);
if (dr == Forms.DialogResult.Yes)
{
var lib = new Database.Library();
lib.DeleteAllChemistry();
Globals.Chem4WordV3.CloseLibrary();
Globals.Chem4WordV3.LoadNamesFromLibrary();
UserInteractions.InformUser("Your library has been cleared.");
}
}
catch (Exception ex)
{
new ReportError(Globals.Chem4WordV3.Telemetry, TopLeft, module, ex).ShowDialog();
}
}
public ObservableCollection <UserTag> LoadUserTagItems(int ChemistryID)
{
var results = new ObservableCollection <UserTag>();
string module = $"{_product}.{_class}.{MethodBase.GetCurrentMethod().Name}()";
try
{
var lib = new Database.Library();
List <UserTagDTO> allTags = lib.GetAllUserTags(ChemistryID);
foreach (var dto in allTags)
{
var tag = new UserTag();
tag.ID = dto.Id;
tag.Text = dto.Text;
results.Add(tag);
}
}
catch (Exception ex)
{
new ReportError(Globals.Chem4WordV3.Telemetry, Globals.Chem4WordV3.WordTopLeft, module, ex).ShowDialog();
}
return(results);
}
public void LoadChemistryItems(string filter)
{
string module = $"{_product}.{_class}.{MethodBase.GetCurrentMethod().Name}()";
try
{
_initializing = true;
ChemistryItems.Clear();
var lib = new Database.Library();
List <ChemistryDTO> dto = lib.GetAllChemistry(filter);
foreach (var chemistry in dto)
{
var mol = new Chemistry();
mol.Initializing = true;
mol.ID = chemistry.Id;
mol.XML = chemistry.Cml;
mol.Name = chemistry.Name;
mol.Formula = chemistry.Formula;
ChemistryItems.Add(mol);
LoadOtherNames(mol);
mol.Initializing = false;
}
_initializing = false;
}
catch (Exception ex)
{
using (var form = new ReportError(Globals.Chem4WordV3.Telemetry, Globals.Chem4WordV3.WordTopLeft, module, ex))
{
form.ShowDialog();
}
}
}
private void ExportFromLibrary_OnClick(object sender, RoutedEventArgs e)
{
string module = $"{_product}.{_class}.{MethodBase.GetCurrentMethod().Name}()";
Globals.Chem4WordV3.Telemetry.Write(module, "Action", "Triggered");
try
{
string exportFolder = Environment.GetFolderPath(Environment.SpecialFolder.MyDocuments);
VistaFolderBrowserDialog browser = new VistaFolderBrowserDialog();
browser.Description = "Select a folder to export your Library's structures as cml files";
browser.UseDescriptionForTitle = true;
browser.RootFolder = Environment.SpecialFolder.Desktop;
browser.ShowNewFolderButton = false;
browser.SelectedPath = exportFolder;
Forms.DialogResult dr = browser.ShowDialog();
if (dr == Forms.DialogResult.OK)
{
exportFolder = browser.SelectedPath;
if (Directory.Exists(exportFolder))
{
Forms.DialogResult doExport = Forms.DialogResult.Yes;
string[] existingCmlFiles = Directory.GetFiles(exportFolder, "*.cml");
if (existingCmlFiles.Length > 0)
{
StringBuilder sb = new StringBuilder();
sb.AppendLine($"This folder contains {existingCmlFiles.Length} cml files.");
sb.AppendLine("Do you wish to continue?");
doExport = UserInteractions.AskUserYesNo(sb.ToString(), Forms.MessageBoxDefaultButton.Button2);
}
if (doExport == Forms.DialogResult.Yes)
{
Database.Library lib = new Database.Library();
int exported = 0;
int progress = 0;
List <ChemistryDTO> dto = lib.GetAllChemistry(null);
int total = dto.Count;
if (total > 0)
{
ProgressBar.Maximum = dto.Count;
ProgressBar.Minimum = 0;
ProgressBarHolder.Visibility = Visibility.Visible;
SetButtonState(false);
var converter = new CMLConverter();
foreach (var obj in dto)
{
progress++;
ShowProgress(progress, $"Structure #{obj.Id} [{progress}/{total}]");
var filename = Path.Combine(browser.SelectedPath, $"Chem4Word-{obj.Id:000000000}.cml");
Model model = converter.Import(obj.Cml);
var outcome = model.EnsureBondLength(Globals.Chem4WordV3.SystemOptions.BondLength, false);
if (!string.IsNullOrEmpty(outcome))
{
Globals.Chem4WordV3.Telemetry.Write(module, "Information", outcome);
}
File.WriteAllText(filename, converter.Export(model));
exported++;
}
}
ProgressBarHolder.Visibility = Visibility.Collapsed;
SetButtonState(true);
if (exported > 0)
{
UserInteractions.InformUser($"Exported {exported} structures to {browser.SelectedPath}");
}
}
}
}
}
catch (Exception ex)
{
ProgressBarHolder.Visibility = Visibility.Collapsed;
SetButtonState(true);
new ReportError(Globals.Chem4WordV3.Telemetry, TopLeft, module, ex).ShowDialog();
}
}
private void ImportIntoLibrary_OnClick(object sender, RoutedEventArgs e)
{
string module = $"{_product}.{_class}.{MethodBase.GetCurrentMethod().Name}()";
Globals.Chem4WordV3.Telemetry.Write(module, "Action", "Triggered");
try
{
if (Globals.Chem4WordV3.LibraryNames == null)
{
Globals.Chem4WordV3.LoadNamesFromLibrary();
}
StringBuilder sb;
// Start with V2 Add-In data path
string importFolder = Path.Combine(Globals.Chem4WordV3.AddInInfo.AppDataPath, @"Chemistry Add-In for Word");
if (Directory.Exists(importFolder))
{
if (Directory.Exists(Path.Combine(importFolder, "Chemistry Gallery")))
{
importFolder = Path.Combine(importFolder, "Chemistry Gallery");
}
}
else
{
importFolder = Environment.GetFolderPath(Environment.SpecialFolder.MyDocuments);
}
if (Directory.Exists(importFolder))
{
// Fix scrolling to selected item by using code from https://social.msdn.microsoft.com/Forums/expression/en-US/1257aebc-22a6-44f6-975b-74f5067728bc/autoposition-showfolder-dialog?forum=vbgeneral
VistaFolderBrowserDialog browser = new VistaFolderBrowserDialog();
browser.Description = "Select a folder to import cml files from";
browser.UseDescriptionForTitle = true;
browser.RootFolder = Environment.SpecialFolder.Desktop;
browser.ShowNewFolderButton = false;
browser.SelectedPath = importFolder;
Forms.DialogResult dr = browser.ShowDialog();
if (dr == Forms.DialogResult.OK)
{
string selectedFolder = browser.SelectedPath;
string doneFile = Path.Combine(selectedFolder, "library-import-done.txt");
sb = new StringBuilder();
sb.AppendLine("Do you want to import the Gallery structures into the Library?");
sb.AppendLine("(This cannot be undone.)");
dr = UserInteractions.AskUserYesNo(sb.ToString());
if (dr == Forms.DialogResult.Yes)
{
if (File.Exists(doneFile))
{
sb = new StringBuilder();
sb.AppendLine($"All files have been imported already from '{selectedFolder}'");
sb.AppendLine("Do you want to rerun the import?");
dr = UserInteractions.AskUserYesNo(sb.ToString());
if (dr == Forms.DialogResult.Yes)
{
File.Delete(doneFile);
}
}
}
if (dr == Forms.DialogResult.Yes)
{
int fileCount = 0;
var lib = new Database.Library();
var transaction = lib.StartTransaction();
try
{
var xmlFiles = Directory.GetFiles(selectedFolder, "*.cml").ToList();
xmlFiles.AddRange(Directory.GetFiles(selectedFolder, "*.mol"));
if (xmlFiles.Count > 0)
{
ProgressBar.Maximum = xmlFiles.Count;
ProgressBar.Minimum = 0;
ProgressBarHolder.Visibility = Visibility.Visible;
SetButtonState(false);
int progress = 0;
int total = xmlFiles.Count;
foreach (string cmlFile in xmlFiles)
{
progress++;
ShowProgress(progress, cmlFile.Replace($"{selectedFolder}\\", "") + $" [{progress}/{total}]");
var cml = File.ReadAllText(cmlFile);
// Set second parameter to true if properties are to be calculated on import
if (lib.ImportCml(cml, transaction, false))
{
fileCount++;
}
}
lib.EndTransaction(transaction, false);
}
ProgressBarHolder.Visibility = Visibility.Collapsed;
SetButtonState(true);
File.WriteAllText(doneFile, $"{fileCount} cml files imported into library");
FileInfo fi = new FileInfo(doneFile);
fi.Attributes = FileAttributes.Hidden;
Globals.Chem4WordV3.LoadNamesFromLibrary();
UserInteractions.InformUser($"Successfully imported {fileCount} structures from '{selectedFolder}'.");
}
catch (Exception ex)
{
lib.EndTransaction(transaction, true);
ProgressBarHolder.Visibility = Visibility.Collapsed;
SetButtonState(true);
new ReportError(Globals.Chem4WordV3.Telemetry, TopLeft, module, ex).ShowDialog();
}
}
}
}
}
catch (Exception ex)
{
ProgressBarHolder.Visibility = Visibility.Collapsed;
SetButtonState(true);
new ReportError(Globals.Chem4WordV3.Telemetry, TopLeft, module, ex).ShowDialog();
}
}
