/// <summary>
/// parses the relevant data from each pair genomic object
/// </summary>
public static void ParseReference(ObjectValue objectValue, DataStructures.VEP.PairGenomic pairGenomic, ImportDataStore dataStore)
{
// loop over all of the key/value pairs in the pair genomic object
foreach (AbstractData ad in objectValue)
{
// handle each key
switch (ad.Key)
{
case GenomicKey:
var genomicNode = ad as ListObjectKeyValue;
if (genomicNode != null)
{
MapperPair.ParseListReference(genomicNode.Values, pairGenomic.Genomic, dataStore);
}
break;
default:
throw new GeneralException($"Unknown key found: {ad.Key}");
}
}
}
/// <summary>
/// parses the relevant data from each pair genomic object
/// </summary>
public static DataStructures.VEP.PairGenomic Parse(ObjectValue objectValue, ImportDataStore dataStore)
{
var pairGenomic = new DataStructures.VEP.PairGenomic();
// loop over all of the key/value pairs in the pair genomic object
foreach (AbstractData ad in objectValue)
{
// sanity check: make sure we know about the keys are used for
if (!KnownKeys.Contains(ad.Key))
{
throw new GeneralException($"Encountered an unknown key in the pair genomic object: {ad.Key}");
}
// handle each key
switch (ad.Key)
{
case GenomicKey:
var genomicNode = ad as ListObjectKeyValue;
if (genomicNode != null)
{
pairGenomic.Genomic = MapperPair.ParseList(genomicNode.Values, dataStore);
}
else if (DumperUtilities.IsUndefined(ad))
{
pairGenomic.Genomic = null;
}
else
{
throw new GeneralException(
$"Could not transform the AbstractData object into an ObjectKeyValue: [{ad.GetType()}]");
}
break;
default:
throw new GeneralException($"Unknown key found: {ad.Key}");
}
}
return(pairGenomic);
}
