public void ParseTags_LessThanFourColumn_ThrowException()
{
const string tagLine = "#CHROM\tPOS\tREF\n";
using (var caParser = new CustomAnnotationsParser(GetReadStream(tagLine), null))
{
Assert.Throws <UserErrorException>(() => caParser.ParseTags());
}
}
public void ParseTypes_InvalidType_ThrowException(string type)
{
string tagAndTypeLines = "#CHROM\tPOS\tREF\tALT\tValue\n" +
$"#type\t.\t.\t.\t{type}";
using (var caParser = new CustomAnnotationsParser(GetReadStream(tagAndTypeLines), null))
{
caParser.ParseTags();
Assert.Throws <UserErrorException>(() => caParser.ParseTypes());
}
}
public void ParseTypes_ValidType_Pass(string type)
{
string tagAndTypeLines = "#CHROM\tPOS\tREF\tALT\tValue\n" +
$"#type\t.\t.\t.\t{type}";
using (var caParser = new CustomAnnotationsParser(GetReadStream(tagAndTypeLines), null))
{
caParser.ParseTags();
caParser.ParseTypes();
}
}
public void CheckPosAndRefColumns_InvalidPosOrRef_ThrowException()
{
const string tagLine = "#CHROM\t\tREF\tALT\n";
using (var caParser = new CustomAnnotationsParser(GetReadStream(tagLine), null))
{
Assert.Throws <UserErrorException>(() => caParser.ParseTags());
}
const string tagLine2 = "#CHROM\tPOS\tREFERENCE\tALT\n";
using (var caParser = new CustomAnnotationsParser(GetReadStream(tagLine2), null))
{
Assert.Throws <UserErrorException>(() => caParser.ParseTags());
}
}
