private void seems_ResizeBegin(object sender, EventArgs e) { if (CurrentGraphForm != null && CurrentGraphForm.WindowState == FormWindowState.Maximized) { CurrentGraphForm.SuspendLayout(); CurrentGraphForm.ZedGraphControl.Visible = false; } }
private void peptideFragmentationToolStripMenuItem_Click(object sender, EventArgs e) { PeptideFragmentationForm peptideFragmentationForm = new PeptideFragmentationForm(); peptideFragmentationForm.ShowDialog(this); if (peptideFragmentationForm.DialogResult == DialogResult.Cancel) { return; } if (peptideFragmentationForm.MsProductReportXml != null) { Map <string, List <Pair <double, int> > > pointAnnotations = new Map <string, List <Pair <double, int> > >(); XmlTextReader reader = new XmlTextReader(new StringReader(peptideFragmentationForm.MsProductReportXml)); string ionSeriesName = "immonium"; string ionSeriesIndex = ""; int previousLabelCount = CurrentGraphForm.CurrentPointAnnotations.Count; while (reader.Read()) { switch (reader.NodeType) { case XmlNodeType.Element: if (reader.Name == "mz") { string[] ionMzChargeStr = reader.ReadElementContentAsString().Split(",".ToCharArray()); double ionMz = Convert.ToDouble(ionMzChargeStr[0]); int ionCharge = Convert.ToInt32(ionMzChargeStr[1]); pointAnnotations[ionSeriesName + ionSeriesIndex].Add(new Pair <double, int>(ionMz, ionCharge)); } else if (reader.Name[0] == 'i') { Int32 test; if (Int32.TryParse(reader.Name.Substring(1), out test)) { ionSeriesIndex = " " + reader.Name.Substring(1); } } else if (reader.Name == "name") { ionSeriesName = reader.ReadElementContentAsString(); } break; } } if (CurrentGraphForm.CurrentScan.IsMassSpectrum) { CurrentGraphForm.AnnotationSettings.setScanLabels(pointAnnotations); if (CurrentGraphForm.CurrentPointAnnotations.Count > previousLabelCount) { CurrentGraphForm.updateGraph(); } } } }
private void clearToolStripMenuItem_Click(object sender, EventArgs e) { if (CurrentGraphForm.CurrentPointAnnotations.Count == 0) { return; } CurrentGraphForm.CurrentPointAnnotations.Clear(); CurrentGraphForm.updateGraph(); }
private void seems_ResizeEnd(object sender, EventArgs e) { if (isLoaded && this.WindowState != FormWindowState.Minimized) { if (this.WindowState == FormWindowState.Normal) { Properties.Settings.Default.MainFormSize = this.Size; } Properties.Settings.Default.MainFormWindowState = this.WindowState; } if (CurrentGraphForm != null && CurrentGraphForm.WindowState == FormWindowState.Maximized) { CurrentGraphForm.ResumeLayout(); CurrentGraphForm.ZedGraphControl.Visible = true; CurrentGraphForm.Refresh(); } }
private void peptideMassMapProteinDigestToolStripMenuItem_Click(object sender, EventArgs e) { PeptideMassMapProteinDigestForm peptideMassMapProteinDigestForm = new PeptideMassMapProteinDigestForm(); peptideMassMapProteinDigestForm.ShowDialog(this); if (peptideMassMapProteinDigestForm.DialogResult == DialogResult.Cancel) { return; } if (peptideMassMapProteinDigestForm.MsDigestReportXml != null) { Map <string, List <Pair <double, int> > > pointAnnotations = new Map <string, List <Pair <double, int> > >(); XmlTextReader reader = new XmlTextReader(new StringReader(peptideMassMapProteinDigestForm.MsDigestReportXml)); double peptideMonoMz = 0, peptideAvgMz = 0; int peptideCharge = 0; string peptideSequence; int previousLabelCount = CurrentGraphForm.CurrentPointAnnotations.Count; while (reader.Read()) { switch (reader.NodeType) { case XmlNodeType.Element: if (reader.Name == "peptide") { peptideMonoMz = peptideAvgMz = 0; peptideCharge = 0; peptideSequence = ""; } else if (reader.Name == "mi_m_over_z") { peptideMonoMz = Convert.ToDouble(reader.ReadElementContentAsString()); } else if (reader.Name == "av_m_over_z") { peptideAvgMz = Convert.ToDouble(reader.ReadElementContentAsString()); } else if (reader.Name == "charge") { peptideCharge = Convert.ToInt32(reader.ReadElementContentAsString()); } else if (reader.Name == "database_sequence") { peptideSequence = reader.ReadElementContentAsString(); if (peptideMonoMz > 0) { pointAnnotations[peptideSequence].Add(new Pair <double, int>(peptideMonoMz, peptideCharge)); } if (peptideAvgMz > 0) { pointAnnotations[peptideSequence].Add(new Pair <double, int>(peptideAvgMz, peptideCharge)); } } break; } } if (CurrentGraphForm.CurrentScan.IsMassSpectrum) { CurrentGraphForm.AnnotationSettings.setScanLabels(pointAnnotations); if (CurrentGraphForm.CurrentPointAnnotations.Count > previousLabelCount) { CurrentGraphForm.updateGraph(); } } } }
private void centroidToolStripMenuItem_CheckedChanged(object sender, EventArgs e) { CurrentGraphForm.updateGraph(); }