private static void ShowErrorMessage(string message, IEnumerable <string> items)
{
ConsoleMsgUtils.ShowErrors(message, items);
}
private static void ShowErrorMessage(string message, IEnumerable <string> additionalInfo)
{
ConsoleMsgUtils.ShowErrors(message, additionalInfo);
}
private static void ShowErrorMessage(string title, IEnumerable <string> errorMessages)
{
ConsoleMsgUtils.ShowErrors(title, errorMessages);
}
private static bool SetOptionsUsingCommandLineParameters(clsParseCommandLine commandLineParser, SplitterOptions options)
{
// Returns True if no problems; otherwise, returns false
var validParameters = new List <string> {
"I", "N", "MB", "O", "P", "S", "A", "R", "L"
};
try
{
// Make sure no invalid parameters are present
if (commandLineParser.InvalidParametersPresent(validParameters))
{
ConsoleMsgUtils.ShowErrors("Invalid command line parameters", (from item in commandLineParser.InvalidParameters(validParameters)
select("/" + item)).ToList());
return(false);
}
// Query commandLineParser to see if various parameters are present
if (commandLineParser.RetrieveValueForParameter("I", out var inputFilePath))
{
mInputFilePath = inputFilePath;
}
else if (commandLineParser.NonSwitchParameterCount > 0)
{
mInputFilePath = commandLineParser.RetrieveNonSwitchParameter(0);
}
if (commandLineParser.RetrieveValueForParameter("N", out var splitCount))
{
if (int.TryParse(splitCount, out var value))
{
options.SplitCount = value;
}
else
{
ConsoleMsgUtils.ShowError(
"Error parsing number from the /N parameter; " +
"for example, use /N:{0} to specify the file be split into {0} parts",
SplitterOptions.DEFAULT_SPLIT_COUNT);
options.SplitCount = SplitterOptions.DEFAULT_SPLIT_COUNT;
}
}
if (commandLineParser.RetrieveValueForParameter("MB", out var targetSizeMB))
{
options.UseTargetFileSize = true;
if (int.TryParse(targetSizeMB, out var value))
{
options.TargetFastaFileSizeMB = value;
}
else
{
ConsoleMsgUtils.ShowError(
"Error parsing number from the /MB parameter; " +
"for example, use /MB:{0} to specify the file be split into files that are each {0} MB in size",
SplitterOptions.DEFAULT_TARGET_FILE_SIZE_MB);
options.TargetFastaFileSizeMB = SplitterOptions.DEFAULT_TARGET_FILE_SIZE_MB;
}
}
if (commandLineParser.RetrieveValueForParameter("O", out var outputDirectory))
{
mOutputDirectoryName = outputDirectory;
}
if (commandLineParser.RetrieveValueForParameter("P", out var parameterFile))
{
mParameterFilePath = parameterFile;
}
if (commandLineParser.RetrieveValueForParameter("S", out var recurseSubdirectories))
{
mRecurseDirectories = true;
if (!int.TryParse(recurseSubdirectories, out mMaxLevelsToRecurse))
{
mMaxLevelsToRecurse = 0;
}
}
if (commandLineParser.RetrieveValueForParameter("A", out var alternateOutputDirectory))
{
mOutputDirectoryAlternatePath = alternateOutputDirectory;
}
if (commandLineParser.IsParameterPresent("R"))
{
mRecreateDirectoryHierarchyInAlternatePath = true;
}
if (commandLineParser.IsParameterPresent("L"))
{
mLogMessagesToFile = true;
}
return(true);
}
catch (Exception ex)
{
ConsoleMsgUtils.ShowError("Error parsing the command line parameters", ex);
return(false);
}
}