public static void Main() { modshogun.init_shogun_with_defaults(); bool reverse = false; int order = 3; int gap = 0; string[] fm_train_dna = Load.load_dna("../data/fm_train_dna.dat"); string[] fm_test_dna = Load.load_dna("../data/fm_test_dna.dat"); StringCharFeatures charfeat = new StringCharFeatures(fm_train_dna, EAlphabet.DNA); StringUlongFeatures feats_train = new StringUlongFeatures(charfeat.get_alphabet()); feats_train.obtain_from_char(charfeat, order-1, order, gap, reverse); charfeat = new StringCharFeatures(fm_test_dna, EAlphabet.DNA); StringUlongFeatures feats_test = new StringUlongFeatures(charfeat.get_alphabet()); feats_test.obtain_from_char(charfeat, order-1, order, gap, reverse); SortUlongString preproc = new SortUlongString(); preproc.init(feats_train); feats_train.add_preprocessor(preproc); feats_train.apply_preprocessor(); feats_test.add_preprocessor(preproc); feats_test.apply_preprocessor(); CommUlongStringKernel kernel = new CommUlongStringKernel(feats_train, feats_train, false); double[,] km_train = kernel.get_kernel_matrix(); kernel.init(feats_train, feats_test); double[,] km_test = kernel.get_kernel_matrix(); modshogun.exit_shogun(); }
public static void Main() { modshogun.init_shogun_with_defaults(); bool reverse = false; int order = 3; int gap = 0; string[] fm_train_dna = Load.load_dna("../data/fm_train_dna.dat"); string[] fm_test_dna = Load.load_dna("../data/fm_test_dna.dat"); StringCharFeatures charfeat = new StringCharFeatures(fm_train_dna, EAlphabet.DNA); StringUlongFeatures feats_train = new StringUlongFeatures(charfeat.get_alphabet()); feats_train.obtain_from_char(charfeat, order - 1, order, gap, reverse); charfeat = new StringCharFeatures(fm_test_dna, EAlphabet.DNA); StringUlongFeatures feats_test = new StringUlongFeatures(charfeat.get_alphabet()); feats_test.obtain_from_char(charfeat, order - 1, order, gap, reverse); SortUlongString preproc = new SortUlongString(); preproc.init(feats_train); feats_train.add_preprocessor(preproc); feats_train.apply_preprocessor(); feats_test.add_preprocessor(preproc); feats_test.apply_preprocessor(); CommUlongStringKernel kernel = new CommUlongStringKernel(feats_train, feats_train, false); double[,] km_train = kernel.get_kernel_matrix(); kernel.init(feats_train, feats_test); double[,] km_test = kernel.get_kernel_matrix(); }
internal static ArrayList run(IList para) { bool reverse = false; modshogun.init_shogun_with_defaults(); int order = (int)((int?)para[0]); int gap = (int)((int?)para[1]); string[] fm_train_dna = Load.load_dna("../data/fm_train_dna.dat"); string[] fm_test_dna = Load.load_dna("../data/fm_test_dna.dat"); StringCharFeatures charfeat = new StringCharFeatures(fm_train_dna, DNA); StringUlongFeatures feats_train = new StringUlongFeatures(charfeat.get_alphabet()); feats_train.obtain_from_char(charfeat, order-1, order, gap, reverse); charfeat = new StringCharFeatures(fm_test_dna, DNA); StringUlongFeatures feats_test = new StringUlongFeatures(charfeat.get_alphabet()); feats_test.obtain_from_char(charfeat, order-1, order, gap, reverse); SortUlongString preproc = new SortUlongString(); preproc.init(feats_train); feats_train.add_preprocessor(preproc); feats_train.apply_preprocessor(); feats_test.add_preprocessor(preproc); feats_test.apply_preprocessor(); CommUlongStringKernel kernel = new CommUlongStringKernel(feats_train, feats_train, false); DoubleMatrix km_train = kernel.get_kernel_matrix(); kernel.init(feats_train, feats_test); DoubleMatrix km_test = kernel.get_kernel_matrix(); ArrayList result = new ArrayList(); result.Add(km_train); result.Add(km_test); result.Add(kernel); modshogun.exit_shogun(); return result; }
internal static HandleRef getCPtr(CommUlongStringKernel obj) { return (obj == null) ? new HandleRef(null, IntPtr.Zero) : obj.swigCPtr; }
internal static HandleRef getCPtr(CommUlongStringKernel obj) { return((obj == null) ? new HandleRef(null, IntPtr.Zero) : obj.swigCPtr); }