internal MitosisFilenames ExtractFilenames(String workingDir)
{
String config = String.IsNullOrEmpty(Args.ConfigFile)
? null
: ExtractFilename(workingDir, Args.ConfigFile);
String initial = String.IsNullOrEmpty(Args.InitialConditionsFile)
? null
: ExtractFilename(workingDir, Args.InitialConditionsFile);
String poles = String.IsNullOrEmpty(Args.PoleCoordsFile)
? null
: ExtractFilename(workingDir, Args.PoleCoordsFile);
String[] cells = null;
if (!String.IsNullOrEmpty(Args.CellFile) && Args.CellCount >= 1)
{
cells = CliArgs.MultiplyCells(Args.CellFile, Args.CellCount);
for (int i = 0; i < cells.Length; i++)
{
cells[i] = ExtractFilename(workingDir, cells[i]);
}
}
return(new MitosisFilenames(config, initial, poles, cells));
}
