public override IEnumerable <string> Process(string targetFilename)
{
CensusStringResult target = new CensusStringResult();
CensusStringResultFormat crf = new CensusStringResultFormat();
Progress.SetRange(1, sourceFilenames.Length + 1);
for (int i = 0; i < sourceFilenames.Length; i++)
{
string f = sourceFilenames[i];
Progress.SetMessage("Reading from " + f + "...");
Progress.SetPosition(i + 1);
CensusStringResult cr = crf.ReadFromFile(f);
target.Proteins.AddRange(cr.Proteins);
}
target.Proteins.Sort((p1, p2) => p2.Peptides.Count - p1.Peptides.Count);
target.Headers = CensusUtils.ReadHeaders(sourceFilenames[0]);
Progress.SetMessage("Writing to " + targetFilename + "...");
crf.WriteToFile(targetFilename, target);
Progress.SetMessage("Write to " + targetFilename + " finished.");
Progress.SetPosition(sourceFilenames.Length + 1);
return(new[] { targetFilename });
}
public void Test()
{
CensusStringResult cr;
cr = new CensusStringResultFormat().ReadFromFile(@"../../../data/census-g1-out.txt");
Assert.AreEqual(3, cr.Proteins.Count);
Assert.AreEqual(271, cr.Proteins[0].Peptides.Count);
}
public void Test()
{
CensusStringResult cr;
cr = new CensusStringResultFormat().ReadFromFile(TestContext.CurrentContext.TestDirectory + "/../../../data/census-g1-out.txt");
Assert.AreEqual(3, cr.Proteins.Count);
Assert.AreEqual(271, cr.Proteins[0].Peptides.Count);
}
