public void TestDataBindingSubList()
{
var boundDataGridView = new BoundDataGridView
{
BindingContext = new BindingContext(),
DataSource = new BindingListSource(),
};
using (boundDataGridView)
{
var columnIds = new[]
{
PropertyPath.Root,
PropertyPath.Parse("Sequence"),
PropertyPath.Parse("AminoAcidsList!*.Code"),
PropertyPath.Parse("Molecule!*"),
};
var viewSpec = new ViewSpec()
.SetColumns(columnIds.Select(id => new ColumnSpec().SetPropertyPath(id)))
.SetSublistId(PropertyPath.Parse("AminoAcidsList!*"));
var viewInfo = new ViewInfo(new DataSchema(), typeof(LinkValue <Peptide>), viewSpec);
// ReSharper disable once UseObjectOrCollectionInitializer
var innerList = new BindingList <LinkValue <Peptide> >();
innerList.Add(new LinkValue <Peptide>(new Peptide("AD"), null));
((BindingListSource)boundDataGridView.DataSource).SetViewContext(new TestViewContext(viewInfo.DataSchema, new[] { new RowSourceInfo(BindingListRowSource.Create(innerList), viewInfo) }));
Assert.AreEqual(2, boundDataGridView.Rows.Count);
innerList.Add(new LinkValue <Peptide>(new Peptide("TISE"), null));
Assert.AreEqual(6, boundDataGridView.Rows.Count);
}
}
public override ToolStripMenuItem CreateMenuItem(BoundDataGridView dataGridView)
{
var toolStripMenuItem =
new ToolStripMenuItem(MenuItemText, null, (sender, args) => RemovePeaks(dataGridView));
if (!GetSelectedResults(dataGridView).Any())
{
toolStripMenuItem.Enabled = false;
}
return(toolStripMenuItem);
}
public override ToolStripMenuItem CreateMenuItem(BoundDataGridView dataGridView)
{
var menuItem = new ToolStripMenuItem(MenuItemText, null, (sender, args) => DeleteNodes(dataGridView));
if (!GetSelectedNodes(dataGridView).Any())
{
menuItem.Enabled = false;
}
return(menuItem);
}
public void RemovePeaks(SrmDocument.DOCUMENT_TYPE docType, BoundDataGridView dataGridView)
{
var parent = FormUtil.FindTopLevelOwner(dataGridView);
var selectedPeaks = GetSelectedPeaks(dataGridView).Distinct().ToArray();
if (selectedPeaks.Length == 0)
{
MessageDlg.Show(parent, Resources.RemovePeaksAction_RemovePeaks_No_peaks_are_selected);
return;
}
var lookup = selectedPeaks.ToLookup(tuple => tuple.Item1, tuple => tuple.Item2).ToArray();
string message = GetConfirmRemoveMessage(docType, selectedPeaks.Length, lookup.Length);
if (MultiButtonMsgDlg.Show(parent, message, MultiButtonMsgDlg.BUTTON_OK) != DialogResult.OK)
{
return;
}
var skylineWindow = GetSkylineWindow(dataGridView);
lock (skylineWindow.GetDocumentChangeLock())
{
skylineWindow.ModifyDocument(Resources.RemovePeaksAction_RemovePeaks_Remove_peaks,
doc =>
{
var longOperationRunner = new LongOperationRunner
{
ParentControl = parent,
JobTitle = Resources.RemovePeaksAction_RemovePeaks_Removing_Peaks
};
SrmDocument resultDocument = doc;
doc = doc.BeginDeferSettingsChanges();
longOperationRunner.Run(broker =>
{
for (int iGroup = 0; iGroup < lookup.Length; iGroup++)
{
broker.ProgressValue = iGroup * 100 / lookup.Length;
if (broker.IsCanceled)
{
return;
}
doc = RemovePeaks(doc, lookup[iGroup]);
}
resultDocument = doc.EndDeferSettingsChanges(resultDocument, null);
});
return(resultDocument);
},
docPair => AuditLogEntry.CreateSingleMessageEntry(
new MessageInfo(MessageType.removed_peaks, docPair.NewDocumentType, selectedPeaks.Length, lookup.Length)));
}
}
public override IEnumerable <Result> GetSelectedResults(BoundDataGridView dataGridView)
{
var rowItemValues = RowItemValues.FromDataGridView(typeof(TransitionResult), dataGridView);
foreach (var rowItem in rowItemValues.GetSelectedRowItems(dataGridView))
{
foreach (var result in rowItemValues.GetRowValues(rowItem).Cast <Result>())
{
yield return(result);
}
}
}
public override IEnumerable <SkylineDocNode> GetSelectedNodes(BoundDataGridView dataGridView)
{
var rowItemValues = RowItemValues.FromDataGridView(typeof(Entities.Transition), dataGridView);
foreach (var rowItem in rowItemValues.GetSelectedRowItems(dataGridView))
{
foreach (var transition in rowItemValues.GetRowValues(rowItem).Cast <Entities.Transition>())
{
yield return(transition);
}
}
}
public IEnumerable <Tuple <IdentityPath, ResultFileKey> > GetSelectedPeaks(BoundDataGridView dataGridView)
{
foreach (var result in GetSelectedResults(dataGridView))
{
if (result.IsEmpty())
{
continue;
}
var resultFile = result.GetResultFile();
var resultFileKey = new ResultFileKey(resultFile.Replicate.ReplicateIndex,
resultFile.ChromFileInfoId, 0);
var tuple = Tuple.Create(result.GetSkylineDocNode().IdentityPath, resultFileKey);
yield return(tuple);
}
}
public override IEnumerable <SkylineDocNode> GetSelectedNodes(BoundDataGridView dataGridView)
{
var rowItemValues = RowItemValues.FromDataGridView(typeof(Protein), dataGridView);
foreach (var rowItem in rowItemValues.GetSelectedRowItems(dataGridView))
{
foreach (var protein in rowItemValues.GetRowValues(rowItem).Cast <Protein>())
{
yield return(protein);
}
}
foreach (var peptide in Peptides.GetSelectedNodes(dataGridView))
{
yield return(((Entities.Peptide)peptide).Protein);
}
}
public override IEnumerable <Result> GetSelectedResults(BoundDataGridView dataGridView)
{
var rowItemValues = RowItemValues.FromDataGridView(typeof(PeptideResult), dataGridView);
foreach (var rowItem in rowItemValues.GetSelectedRowItems(dataGridView))
{
foreach (var result in rowItemValues.GetRowValues(rowItem).Cast <Result>())
{
yield return(result);
}
}
foreach (var precursorResult in Precursors.GetSelectedResults(dataGridView))
{
yield return(((PrecursorResult)precursorResult).PeptideResult);
}
}
public override IEnumerable <SkylineDocNode> GetSelectedNodes(BoundDataGridView dataGridView)
{
var rowItemValues = RowItemValues.FromDataGridView(typeof(Entities.Peptide), dataGridView);
foreach (var rowItem in rowItemValues.GetSelectedRowItems(dataGridView))
{
foreach (var precursor in rowItemValues.GetRowValues(rowItem).Cast <Entities.Peptide>())
{
yield return(precursor);
}
}
foreach (var precursor in Precursors.GetSelectedNodes(dataGridView))
{
yield return(((Precursor)precursor).Peptide);
}
}
private HashSet <ListItemId> GetSelectedListItems(BoundDataGridView dataGridView)
{
var listIds = new HashSet <ListItemId>();
if (dataGridView == null)
{
return(listIds);
}
var bindingSource = dataGridView.DataSource as BindingListSource;
if (bindingSource == null)
{
return(listIds);
}
var selectedRows = dataGridView.SelectedRows.Cast <DataGridViewRow>()
.Where(row => !row.IsNewRow)
.Select(row => (RowItem)bindingSource[row.Index]).ToArray();
if (!selectedRows.Any())
{
selectedRows = new[] { bindingSource.Current as RowItem };
}
foreach (var rowItem in selectedRows)
{
if (rowItem == null)
{
continue;
}
var listItem = rowItem.Value as ListItem;
if (listItem == null)
{
continue;
}
var existingRecord = listItem.GetRecord() as ListItem.ExistingRecordData;
if (null != existingRecord)
{
listIds.Add(existingRecord.ListItemId);
}
}
return(listIds);
}
private List <SkylineDocNode> GetSelectedDocNodes(BoundDataGridView dataGridView)
{
var docNodes = new List <SkylineDocNode>();
var identityPaths = new HashSet <IdentityPath>();
if (null == dataGridView)
{
return(docNodes);
}
var bindingSource = dataGridView.DataSource as BindingListSource;
if (null == bindingSource)
{
return(docNodes);
}
var selectedRows = dataGridView.SelectedRows.Cast <DataGridViewRow>()
.Select(row => (RowItem)bindingSource[row.Index]).ToArray();
if (!selectedRows.Any())
{
selectedRows = new[] { bindingSource.Current as RowItem };
}
foreach (var rowItem in selectedRows)
{
if (rowItem == null)
{
continue;
}
var docNode = rowItem.Value as SkylineDocNode;
if (docNode == null)
{
continue;
}
if (identityPaths.Add(docNode.IdentityPath))
{
docNodes.Add(docNode);
}
}
return(docNodes);
}
private IEnumerable <SkylineDocNode> GetSelectedDocNodes(BoundDataGridView dataGridView)
{
if (null == dataGridView)
{
return(new SkylineDocNode[0]);
}
var bindingSource = dataGridView.DataSource as BindingListSource;
if (null == bindingSource)
{
return(new SkylineDocNode[0]);
}
var selectedRows = dataGridView.SelectedRows.Cast <DataGridViewRow>()
.Select(row => (RowItem)bindingSource[row.Index]).ToArray();
if (!selectedRows.Any() && bindingSource.Current is RowItem rowItem)
{
selectedRows = new[] { rowItem };
}
return(selectedRows.Select(row => row.Value).OfType <SkylineDocNode>());
}
public static void DeleteSkylineDocNodes(SkylineWindow skylineWindow, BoundDataGridView dataGridView, IEnumerable <SkylineDocNode> docNodesToDelete)
{
var docNodes = (ICollection <SkylineDocNode>)DistinctNodes(docNodesToDelete).ToList();
if (docNodes.Count == 0)
{
return;
}
var owner = FormUtil.FindTopLevelOwner(dataGridView);
var confirmationMessages = docNodes.Select(node => node.GetDeleteConfirmation(docNodes.Count)).Distinct()
.ToArray();
string message = confirmationMessages.Length == 1
? confirmationMessages[0]
: SkylineDocNode.GetGenericDeleteConfirmation(docNodes.Count);
if (MultiButtonMsgDlg.Show(owner, message, MultiButtonMsgDlg.BUTTON_OK) != DialogResult.OK)
{
return;
}
DeleteDocNodes(skylineWindow, new HashSet <IdentityPath>(docNodes.Select(node => node.IdentityPath)));
}
/// <summary>
/// Called just before the selection has changed in Skyline, and the LiveResultsGrid is going
/// to be displaying a different view, this method saves the current widths of the columns.
/// </summary>
public void RememberColumnWidths(BoundDataGridView boundDataGridView)
{
var bindingListSource = boundDataGridView.DataSource as BindingListSource;
if (null == bindingListSource || !bindingListSource.IsComplete)
{
return;
}
string gridColumnsKey = GetGridColumnsKey(bindingListSource.ViewInfo);
if (null == gridColumnsKey)
{
return;
}
var itemProperties = bindingListSource.GetItemProperties(null);
var gridColumnList = new List <GridColumn>();
var propertyPaths = new HashSet <PropertyPath>();
foreach (DataGridViewColumn column in boundDataGridView.Columns)
{
var columnPropertyDescriptor =
itemProperties.Find(column.DataPropertyName, false) as ColumnPropertyDescriptor;
if (null == columnPropertyDescriptor)
{
continue;
}
if (!propertyPaths.Add(columnPropertyDescriptor.PropertyPath))
{
continue;
}
gridColumnList.Add(new GridColumn(GetPersistedColumnName(columnPropertyDescriptor.PropertyPath), true, column.Width));
}
var allGridColumnLists = Properties.Settings.Default.GridColumnsList;
allGridColumnLists.Add(new GridColumns(gridColumnsKey, gridColumnList));
Properties.Settings.Default.GridColumnsList = allGridColumnLists;
}
protected void DoResultsGridView()
{
// Results Grid View
RestoreViewOnScreen(25);
PauseForScreenShot <LiveResultsGrid>("Take full screen capture of floating windows", 25);
RestoreViewOnScreen(26);
PauseForScreenShot("Main window layout", 26);
// Not understood: WaitForOpenForm occasionally hangs in nightly test runs. Fixed it by calling
// ShowDialog when LiveResultsGrid cannot be found.
//var resultsGridForm = WaitForOpenForm<LiveResultsGrid>();
var resultsGridForm = FindOpenForm <LiveResultsGrid>() ??
ShowDialog <LiveResultsGrid>(() => SkylineWindow.ShowResultsGrid(true));
BoundDataGridView resultsGrid = null;
RunUI(() =>
{
resultsGrid = resultsGridForm.DataGridView;
SkylineWindow.AutoZoomBestPeak();
SkylineWindow.SelectedPath = ((SrmTreeNode)SkylineWindow.SequenceTree.SelectedNode.Nodes[0]).Path;
});
WaitForGraphs();
RunUI(() =>
{
var precursorNoteColumn =
resultsGrid.Columns.Cast <DataGridViewColumn>()
.First(col => GetLocalizedCaption("PrecursorReplicateNote") == col.HeaderText);
resultsGrid.CurrentCell = resultsGrid.Rows[0].Cells[precursorNoteColumn.Index];
resultsGrid.BeginEdit(true);
// ReSharper disable LocalizableElement
resultsGrid.EditingControl.Text = "Low signal"; // Not L10N
// ReSharper restore LocalizableElement
resultsGrid.EndEdit();
resultsGrid.CurrentCell = resultsGrid.Rows[1].Cells[resultsGrid.CurrentCell.ColumnIndex];
});
WaitForGraphs();
RunUI(() => SkylineWindow.SelectedResultsIndex = 1);
WaitForGraphs();
PauseForScreenShot("Results Grid view subsection", 27);
RunDlg <ViewEditor>(resultsGridForm.NavBar.CustomizeView, resultsGridViewEditor =>
{
// TODO: Update tutorial instructions with new name.
resultsGridViewEditor.ViewName = "NewResultsGridView";
var chooseColumnTab = resultsGridViewEditor.ChooseColumnsTab;
foreach (
var column in
new[]
{
PropertyPath.Parse("MinStartTime"), PropertyPath.Parse("MaxEndTime"),
PropertyPath.Parse("LibraryDotProduct"), PropertyPath.Parse("TotalBackground"),
PropertyPath.Parse("TotalAreaRatio")
})
{
Assert.IsTrue(chooseColumnTab.ColumnNames.Contains(GetLocalizedCaption(column.Name)));
Assert.IsTrue(chooseColumnTab.TrySelect(column), "Unable to select {0}", column);
chooseColumnTab.RemoveColumn(column);
Assert.IsFalse(chooseColumnTab.ColumnNames.Contains(GetLocalizedCaption(column.Name)));
}
resultsGridViewEditor.OkDialog();
});
RunUI(() => SkylineWindow.SelectedNode.Expand());
// Custom Annotations, p. 25
var chooseAnnotationsDlg = ShowDialog <DocumentSettingsDlg>(SkylineWindow.ShowDocumentSettingsDialog);
var editListDlg = ShowDialog <EditListDlg <SettingsListBase <AnnotationDef>, AnnotationDef> >(chooseAnnotationsDlg.EditAnnotationList);
var defineAnnotationDlg = ShowDialog <DefineAnnotationDlg>(editListDlg.AddItem);
RunUI(() =>
{
defineAnnotationDlg.AnnotationName = "Tailing"; // Not L10N
defineAnnotationDlg.AnnotationType = AnnotationDef.AnnotationType.true_false;
defineAnnotationDlg.AnnotationTargets = AnnotationDef.AnnotationTargetSet.Singleton(AnnotationDef.AnnotationTarget.precursor_result);
});
PauseForScreenShot <DefineAnnotationDlg>("Define Annotation form", 28);
OkDialog(defineAnnotationDlg, defineAnnotationDlg.OkDialog);
OkDialog(editListDlg, editListDlg.OkDialog);
RunUI(() => chooseAnnotationsDlg.AnnotationsCheckedListBox.SetItemChecked(0, true));
PauseForScreenShot <DocumentSettingsDlg>("Annotation Settings form", 29); // p. 26
OkDialog(chooseAnnotationsDlg, chooseAnnotationsDlg.OkDialog);
FindNode((564.7746).ToString(LocalizationHelper.CurrentCulture) + "++");
var liveResultsGrid = FindOpenForm <LiveResultsGrid>();
ViewEditor viewEditor = ShowDialog <ViewEditor>(liveResultsGrid.NavBar.CustomizeView);
RunUI(() =>
{
viewEditor.ChooseColumnsTab.ActivateColumn(2);
Assert.IsTrue(viewEditor.ChooseColumnsTab.TrySelect(
PropertyPath.Root.Property(AnnotationDef.ANNOTATION_PREFIX + "Tailing")));
viewEditor.ChooseColumnsTab.AddSelectedColumn();
});
PauseForScreenShot <ViewEditor.ChooseColumnsView>("Customize View form showing Tailing annotation checked", 30);
OkDialog(viewEditor, viewEditor.OkDialog);
PauseForScreenShot("Main window with Tailing column added to Results Grid"); // p. 27
}
public override ToolStripMenuItem CreateMenuItem(SrmDocument.DOCUMENT_TYPE docType, BoundDataGridView dataGridView)
{
var toolStripMenuItem =
new ToolStripMenuItem(GetMenuItemText(docType), null, (sender, args) => RemovePeaks(docType, dataGridView));
if (!GetSelectedResults(dataGridView).Any())
{
toolStripMenuItem.Enabled = false;
}
return(toolStripMenuItem);
}
public abstract ToolStripMenuItem CreateMenuItem(SrmDocument.DOCUMENT_TYPE documentType, BoundDataGridView dataGridView);
public abstract IEnumerable <Result> GetSelectedResults(BoundDataGridView dataGridView);
protected SkylineWindow GetSkylineWindow(BoundDataGridView dataGridView)
{
return(((SkylineDataSchema)((BindingListSource)dataGridView.DataSource).ViewContext.DataSchema).SkylineWindow);
}
/// <summary>
/// Attaches a DataGridViewPasteHandler to the specified DataGridView.
/// </summary>
public static DataGridViewPasteHandler Attach(BoundDataGridView boundDataGridView)
{
return(new DataGridViewPasteHandler(boundDataGridView));
}
private DataGridViewPasteHandler(BoundDataGridView boundDataGridView)
{
DataGridView = boundDataGridView;
DataGridView.KeyDown += DataGridViewOnKeyDown;
}
protected void DeleteNodes(BoundDataGridView dataGridView)
{
DeleteSkylineDocNodes(GetSkylineWindow(dataGridView), dataGridView, GetSelectedNodes(dataGridView));
}
public override ToolStripMenuItem CreateMenuItem(SrmDocument.DOCUMENT_TYPE docType, BoundDataGridView dataGridView)
{
var menuItem = new ToolStripMenuItem(GetMenuItemText(docType), null, (sender, args) => DeleteNodes(dataGridView));
if (!GetSelectedNodes(dataGridView).Any())
{
menuItem.Enabled = false;
}
return(menuItem);
}
public abstract IEnumerable <SkylineDocNode> GetSelectedNodes(BoundDataGridView dataGridView);
public abstract ToolStripMenuItem CreateMenuItem(BoundDataGridView dataGridView);
protected void DeleteSkylineDocNodes(BoundDataGridView dataGridView, IEnumerable <SkylineDocNode> docNodes)
{
DeleteNodesAction.DeleteSkylineDocNodes(SkylineDataSchema.SkylineWindow, dataGridView, docNodes);
}
