/// <summary>
/// Matches library peptides to the current document settings and adds them to the document.
/// This needs to be one function so that we can use one LongWaitDlg.
/// </summary>
public void AddAllPeptidesToDocument(ILongWaitBroker broker, AuditLogEntryCreatorList entryCreators)
{
MatchAllPeptides(broker);
if (broker.IsCanceled)
{
return;
}
if (MatchedPeptideCount == 0)
{
return;
}
if (broker.ShowDialog(wnd => EnsureDuplicateProteinFilter(wnd, entryCreators)) == DialogResult.Cancel)
{
return;
}
IdentityPath selectedPath;
IdentityPath toPath = AddAllPeptidesSelectedPath;
DocAllPeptides = AddPeptides(_document, broker, toPath, out selectedPath);
AddAllPeptidesSelectedPath = selectedPath;
}
/// <summary>
/// If peptides match to multiple proteins, ask the user what they want to do with these
/// peptides.
/// </summary>
public DialogResult EnsureDuplicateProteinFilter(IWin32Window parent, bool single, AuditLogEntryCreatorList entryCreators)
{
var result = DialogResult.OK;
var multipleProteinsPerPeptideCount = PeptideMatches.Values.Count(
pepMatch => pepMatch.Proteins != null && pepMatch.Proteins.Count > 1);
var unmatchedPeptidesCount =
PeptideMatches.Values.Count(pepMatch => pepMatch.Proteins != null && pepMatch.Proteins.Count == 0);
var filteredPeptidesCount = PeptideMatches.Values.Count(pepMatch => !pepMatch.MatchesFilterSettings);
if (multipleProteinsPerPeptideCount > 0 || unmatchedPeptidesCount > 0 || filteredPeptidesCount > 0)
{
var hasSmallMolecules = PeptideMatches.Any(p => !p.Key.IsProteomic);
using (var peptideProteinsDlg =
new FilterMatchedPeptidesDlg(multipleProteinsPerPeptideCount, unmatchedPeptidesCount, filteredPeptidesCount, single, hasSmallMolecules))
{
result = peptideProteinsDlg.ShowDialog(parent);
if (entryCreators != null)
{
entryCreators.Add(peptideProteinsDlg.FormSettings.EntryCreator);
}
}
}
return(result);
}
public DialogResult EnsureDuplicateProteinFilter(IWin32Window parent, AuditLogEntryCreatorList entryCreators)
{
return(EnsureDuplicateProteinFilter(parent, false, entryCreators));
}
