/// <summary>
/// This method would create text field.
/// </summary>
/// <param name="alignmentAttribute">Alignment parameter</param>
/// <param name="parentPanel">Stack panel, the field will be added to this stackpanel</param>
/// <param name="tag">Tag of the control object</param>
private void CreateTextField(
AlignmentInfo alignmentAttribute,
StackPanel parentPanel,
string tag)
{
TextBlock block = new TextBlock {
Margin = new Thickness(0, 10, 0, 0),
TextWrapping = TextWrapping.Wrap,
Text = alignmentAttribute.Name,
Height = 20
};
TextBox box = new TextBox {
HorizontalAlignment = HorizontalAlignment.Left,
Margin = new Thickness(0, 0, 0, 0),
TextWrapping = TextWrapping.Wrap,
Text = alignmentAttribute.DefaultValue,
Tag = tag,
Width = 120,
Height = 20,
ToolTip = alignmentAttribute.Description
};
parentPanel.Children.Add(block);
parentPanel.Children.Add(box);
}
/// <summary>
/// This method would create combo field.
/// </summary>
/// <param name="alignmentAttribute">Alignment parameter</param>
/// <param name="parentPanel">Stack panel, the field will be added to this stackpanel</param>
/// <param name="tag">Tag of the control object</param>
private void CreateComboField(
AlignmentInfo alignmentAttribute,
StackPanel parentPanel,
string tag)
{
TextBlock block = new TextBlock();
block.Margin = new Thickness(0, 5, 0, 0);
block.TextWrapping = TextWrapping.Wrap;
block.Text = alignmentAttribute.Name;
block.Height = 20;
ComboBox combo = new ComboBox();
combo.HorizontalAlignment = HorizontalAlignment.Left;
combo.IsSynchronizedWithCurrentItem = true;
combo.Margin = new Thickness(0, 0, 0, 0);
combo.Tag = tag;
combo.Width = 180;
combo.Height = 22;
combo.ToolTip = alignmentAttribute.Description;
StringListValidator validator = alignmentAttribute.Validator as StringListValidator;
combo.ItemsSource = validator.ValidValues;
combo.SelectedIndex = validator.ValidValues.ToList().IndexOf(alignmentAttribute.DefaultValue);
if (alignmentAttribute.Name == "Similarity Matrix")
{
combo.SelectedIndex = validator.ValidValues.ToList().IndexOf(this.defaultSM);
}
parentPanel.Children.Add(block);
parentPanel.Children.Add(combo);
}
public void ValidateNUCmerAttributes()
{
NUCmerAttributes nucAttrib = new NUCmerAttributes();
Dictionary <string, AlignmentInfo> attributes = nucAttrib.Attributes;
Assert.AreEqual(9, attributes.Count);
// Validating all the NUCmer attributes
AlignmentInfo similarityMatrixObj = attributes["SIMILARITYMATRIX"];
AlignmentInfo gapOpenCostObj = attributes["GAPOPENCOST"];
AlignmentInfo gapExtensionCostObj = attributes["GAPEXTENSIONCOST"];
AlignmentInfo lenOfMumObj = attributes["LENGTHOFMUM"];
AlignmentInfo fixedSepObj = attributes["FIXEDSEPARATION"];
AlignmentInfo maxSepObj = attributes["MAXIMUMSEPARATION"];
AlignmentInfo minScoreObj = attributes["MINIMUMSCORE"];
AlignmentInfo sepFactorObj = attributes["SEPARATIONFACTOR"];
AlignmentInfo breakLengthObj = attributes["BREAKLENGTH"];
Assert.AreEqual("Similarity Matrix", similarityMatrixObj.Name);
Assert.AreEqual("Gap Cost", gapOpenCostObj.Name);
Assert.AreEqual("Gap Extension Cost", gapExtensionCostObj.Name);
Assert.AreEqual("Length of MUM", lenOfMumObj.Name);
Assert.AreEqual("Fixed Separation", fixedSepObj.Name);
Assert.AreEqual("Maximum Separation", maxSepObj.Name);
Assert.AreEqual("Minimum Score", minScoreObj.Name);
Assert.AreEqual("Separation Factor", sepFactorObj.Name);
Assert.AreEqual("Break Length", breakLengthObj.Name);
ApplicationLog.WriteLine(
"NUCmerAttributes BVT: Successfully validated all the attributes.");
}
/// <summary>
/// This method would create text field.
/// </summary>
/// <param name="alignmentAttribute">Alignment parameter</param>
/// <param name="parentPanel">Stack panel, the field will be added to this stack panel</param>
/// <param name="tag">Tag of the control object</param>
private void CreateTextField(
AlignmentInfo alignmentAttribute,
StackPanel parentPanel,
string tag)
{
TextBlock block = new TextBlock();
block.Margin = new Thickness(0, 5, 0, 0);
block.TextWrapping = TextWrapping.Wrap;
block.Text = alignmentAttribute.Name;
block.Height = 20;
TextBox box = new TextBox();
box.HorizontalAlignment = HorizontalAlignment.Left;
box.Margin = new Thickness(0, 0, 0, 0);
box.TextWrapping = TextWrapping.Wrap;
box.Text = alignmentAttribute.DefaultValue;
box.Tag = tag;
box.Width = 120;
box.Height = 20;
box.ToolTip = alignmentAttribute.Description;
parentPanel.Children.Add(block);
parentPanel.Children.Add(box);
}
/// <summary>
/// This method would create combo field.
/// </summary>
/// <param name="alignmentAttribute">Alignment parameter</param>
/// <param name="parentPanel">Stack panel, the field will be added to this stackpanel</param>
/// <param name="tag">Tag of the control object</param>
private void CreateComboField(
AlignmentInfo alignmentAttribute,
StackPanel parentPanel,
string tag)
{
TextBlock block = new TextBlock {
Margin = new Thickness(0, 10, 0, 0),
TextWrapping = TextWrapping.Wrap,
Text = alignmentAttribute.Name,
Height = 20
};
ComboBox combo = new ComboBox {
HorizontalAlignment = HorizontalAlignment.Left,
IsSynchronizedWithCurrentItem = true,
Margin = new Thickness(0, 0, 0, 0),
Tag = tag,
Width = 180,
Height = 22,
ToolTip = alignmentAttribute.Description
};
StringListValidator validator = alignmentAttribute.Validator as StringListValidator;
combo.ItemsSource = validator.ValidValues;
combo.SelectedIndex = validator.ValidValues.ToList().IndexOf(alignmentAttribute.DefaultValue);
if (alignmentAttribute.Name == "Similarity Matrix")
{
combo.SelectedIndex = validator.ValidValues.ToList().IndexOf(GetDefaultSM(this.sequenceAlphabet));
}
parentPanel.Children.Add(block);
parentPanel.Children.Add(combo);
}
/// <summary>
/// Converts TextBox ContentAlignment to String Alignment
/// </summary>
/// <returns></returns>
public static StringAlignment ContentAlignmentToStringAlignment(MgTextBox control)
{
AlignmentInfo alignmentInfo = GetAlignmentInfo(control.TextAlign);
switch (alignmentInfo.HorAlign)
{
case AlignmentTypeHori.Center:
return(StringAlignment.Center);
case AlignmentTypeHori.Left:
if (control.RightToLeft == RightToLeft.Yes)
{
return(StringAlignment.Far);
}
else
{
return(StringAlignment.Near);
}
case AlignmentTypeHori.Right:
if (control.RightToLeft == RightToLeft.Yes)
{
return(StringAlignment.Near);
}
else
{
return(StringAlignment.Far);
}
default:
return(StringAlignment.Near);
}
}
public void ValidatePairwiseAlignmentAttributes()
{
var pwAlignAttrib = new PairwiseAlignmentAttributes();
Dictionary <string, AlignmentInfo> attributes = pwAlignAttrib.Attributes;
AlignmentInfo similarityMatrixObj = attributes["SIMILARITYMATRIX"];
AlignmentInfo gapOpenCostObj = attributes["GAPOPENCOST"];
AlignmentInfo gapExtensionCostObj = attributes["GAPEXTENSIONCOST"];
Assert.AreEqual("Similarity Matrix", similarityMatrixObj.Name);
var validator = new StringListValidator(
"Diagonal (Match x Mismatch)",
SimilarityMatrix.StandardSimilarityMatrix.AmbiguousDna.ToString(),
SimilarityMatrix.StandardSimilarityMatrix.AmbiguousRna.ToString(),
SimilarityMatrix.StandardSimilarityMatrix.Blosum45.ToString(),
SimilarityMatrix.StandardSimilarityMatrix.Blosum50.ToString(),
SimilarityMatrix.StandardSimilarityMatrix.Blosum62.ToString(),
SimilarityMatrix.StandardSimilarityMatrix.Blosum80.ToString(),
SimilarityMatrix.StandardSimilarityMatrix.Blosum90.ToString(),
SimilarityMatrix.StandardSimilarityMatrix.DiagonalScoreMatrix.ToString(),
SimilarityMatrix.StandardSimilarityMatrix.Pam250.ToString(),
SimilarityMatrix.StandardSimilarityMatrix.Pam30.ToString());
Assert.IsTrue(validator.IsValid(SimilarityMatrix.StandardSimilarityMatrix.AmbiguousDna.ToString()));
validator.AddValidValues(SimilarityMatrix.StandardSimilarityMatrix.Pam70.ToString());
Assert.AreEqual("Diagonal (Match x Mismatch)", validator.ValidValues[0]);
Assert.AreEqual("Gap Cost", gapOpenCostObj.Name);
Assert.AreEqual("Gap Extension Cost", gapExtensionCostObj.Name);
ApplicationLog.WriteLine(
"PairwiseAlignmentAttributes BVT: Successfully validated all the attributes.");
}
/// <summary>
/// Initializes a new instance of the <see cref="Field" /> class.
/// </summary>
/// <param name="name">The name.</param>
/// <param name="type">The type.</param>
/// <param name="position">The position.</param>
/// <param name="alignmentInfo">The alignment information.</param>
/// <param name="isPaddingField">if set to <c>true</c> this is a padding field.</param>
public Field(string name, Type type, int position, AlignmentInfo alignmentInfo, bool isPaddingField = false)
{
Name = name;
Position = position;
Type = type;
AlignmentInfo = alignmentInfo;
IsPaddingField = isPaddingField;
}
/// <summary>
/// Initializes a new instance of the MUMmerAttributes class.
/// </summary>
public MUMmerAttributes()
{
AlignmentInfo alignmentAttribute = new AlignmentInfo(
Properties.Resource.LENGTH_OF_MUM_NAME,
Properties.Resource.LENGTH_OF_MUM_DESCRIPTION,
true,
"20",
AlignmentInfo.IntType,
null);
Attributes.Add(LengthOfMUM, alignmentAttribute);
}
public FieldDefinition(
string name,
TypeReference type,
GeometrySemantic semanticType,
int arrayElementCount,
AlignmentInfo size)
{
Name = name;
Type = type;
GeometrySemantic = semanticType;
ArrayElementCount = arrayElementCount;
Alignment = size;
}
/// <summary>
/// in WebInfo.cpp we send the HorAligement property revers, because the control displays the text according to the RTL Property
/// the printText() displays the text according to the send aligment so we need to reverse the org horisontal aligment
/// </summary>
/// <param name="rightToLeft"></param>
/// <param name="AlignmentInfo"></param>
/// <param name="TextAlign"></param>
/// <returns></returns>
public static ContentAlignment GetOrgContentAligment(RightToLeft rightToLeft, ContentAlignment TextAlign)
{
AlignmentInfo alignmentInfo = GetAlignmentInfo(TextAlign);
ContentAlignment NewTextAli = TextAlign;
if (rightToLeft == RightToLeft.Yes && alignmentInfo.HorAlign != AlignmentTypeHori.Center)
{
AlignmentTypeHori newTypeHor = (alignmentInfo.HorAlign == AlignmentTypeHori.Right ? AlignmentTypeHori.Left : AlignmentTypeHori.Right);
NewTextAli = GetContentAligmentForHorAligmentAndVerAligment(newTypeHor, alignmentInfo.VerAlign);
}
return(NewTextAli);
}
/// <summary>
///
/// </summary>
/// <param name="contentAlignment"></param>
/// <param name="HorAligment"></param>
/// <returns></returns>
public static ContentAlignment GetContentAligmentForSetHorAligment(ContentAlignment contentAlignment, AlignmentTypeHori HorAligment)
{
ContentAlignment RetContentAlignment;
//get the Current Content alignment info from the ContentAlignmentTable
AlignmentInfo aligmentInfo = _contentAlignmentTable[contentAlignment];
//get the current Vertical alignment
AlignmentTypeVert CurrVerAligment = aligmentInfo.VerAlign;
//get the new Contant alignment from the HorVerConversion;
RetContentAlignment = _horVerTranslation[(int)(CurrVerAligment - 1), (int)(HorAligment - 1)];
return(RetContentAlignment);
}
/// <summary>return the display rect of the display size according to the contentAlignment</summary>
/// <param name="ClientRect"></param>
/// <param name="DisplaySize"></param>
/// <param name="contentAlignment"></param>
/// <returns></returns>
public static Rectangle GetFocusRect(Control control, Rectangle displayRect,
ContentAlignment contentAlignment, Size textSize)
{
AlignmentInfo aligmentInfo = GetAlignmentInfo(contentAlignment);
//get the current vertical\horizontal aligment
AlignmentTypeVert alignmentTypeVert = aligmentInfo.VerAlign;
AlignmentTypeHori alignmentTypeHori = aligmentInfo.HorAlign;
Rectangle focusRect = new Rectangle(displayRect.X, displayRect.Y, textSize.Width, textSize.Height);
switch (alignmentTypeVert)
{
case AlignmentTypeVert.Top:
break;
case AlignmentTypeVert.Bottom:
focusRect.Y = displayRect.Bottom - textSize.Height;
break;
case AlignmentTypeVert.Center:
focusRect.Y += (displayRect.Height - textSize.Height) / 2;
break;
}
switch (alignmentTypeHori)
{
case AlignmentTypeHori.Left:
break;
case AlignmentTypeHori.Right:
focusRect.X = displayRect.Right - textSize.Width;
break;
case AlignmentTypeHori.Center:
focusRect.X += (displayRect.Width - textSize.Width) / 2;
break;
}
//check the rect focus that is not out the control
focusRect.X = Math.Max(1, focusRect.X);
focusRect.Width = Math.Min(focusRect.Width, control.ClientRectangle.Width - focusRect.X);
return(focusRect);
}
public override bool Findcenter(Bitmap bmp, ref double dx, ref double dy, ref List <double> Array, bool MF)
{
if (ParamSetMgr.GetInstance().GetBoolParam("更换对心算法"))
{
return(false);
}
else
{
AlignmentInfo info = new AlignmentInfo();
try
{
if (bmp == null)
{
return(false);
}
Bitmap temp = (Bitmap)bmp.Clone();
bool bRet = false;
int nWidth = temp.Width;
int nHeight = temp.Height;
byte[] byBuffer = ImageChangeHelper.Instance.Rgb2Gray(bmp);
int collimatorNum = ParamSetMgr.GetInstance().GetIntParam("[SFR] CollimatorNum");
bool bCheckMode = (collimatorNum == 2) ? true : false;
unsafe
{
fixed(byte *pbuffer = byBuffer)
{
bRet = ActiveAlignment.GetAlignmentValue_Collimators(pbuffer, nWidth, nHeight, bCheckMode, ref info);
}
}
temp.Dispose();
dx = info.dSx;
dy = info.dSy;
return(bRet);
}
catch (Exception ex)
{
return(false);
}
}
}
public Creator(Type type, AlignmentInfo alignmentInfo)
{
Type = type;
AlignmentInfo = alignmentInfo;
}
public override bool Findcenter(Bitmap bmp, ref double dx, ref double dy, ref List <double> Array, bool MF)
{
if (ParamSetMgr.GetInstance().GetBoolParam("更换对心算法"))
{
HObject ho_Image = null, ho_GrayImage = null; HTuple hv_Area0 = new HTuple();
try
{
ImageChangeHelper.Instance.Bitmap2HObject((Bitmap)bmp.Clone(), ref ho_Image);
if (ho_Image == null)
{
return(false);
}
}
catch
{
return(false);
}
try
{
HObject ho_SelectedRegions0 = null;
HTuple hv_CenterROIR = null, hv_CenterROIC = null, hv_CenterMinArea = null;
HTuple hv_CenterSFRThreshold = null;
HTuple hv_CenterClosing = null, hv_Width = new HTuple(), hv_Height = new HTuple();
HTuple hv_Row0 = new HTuple(), hv_Column0 = new HTuple();
hv_CenterROIR = ParamSetMgr.GetInstance().GetIntParam("[SFR] nCenterROIW");
hv_CenterROIC = ParamSetMgr.GetInstance().GetIntParam("[SFR] nCenterROIH");
hv_CenterMinArea = ParamSetMgr.GetInstance().GetDoubleParam("MF中心对心最小面积");
hv_CenterSFRThreshold = ParamSetMgr.GetInstance().GetDoubleParam("MF中心对心阈值设置");
hv_CenterClosing = ParamSetMgr.GetInstance().GetDoubleParam("MF中心对心膨胀系数");
double pixelSize = ParamSetMgr.GetInstance().GetDoubleParam("[Sensor] dPixelSize");
HOperatorSet.Rgb1ToGray(ho_Image, out ho_GrayImage);
HOperatorSet.GetImageSize(ho_GrayImage, out hv_Width, out hv_Height);
bool result = FindCenterRegions(ho_Image, hv_CenterROIR, hv_CenterROIC, 0, 0, hv_CenterMinArea, hv_CenterSFRThreshold, hv_CenterClosing, ref ho_SelectedRegions0);
if (!result)
{
return(false);
}
HOperatorSet.AreaCenter(ho_SelectedRegions0, out hv_Area0, out hv_Row0, out hv_Column0);
dx = (hv_Column0.D - hv_Width / 2) * pixelSize / 1000.0;
dy = (hv_Row0.D - hv_Height / 2) * pixelSize / 1000.0;
////对心
//HObject ho_Rectangle0 = null;
//HObject ho_ImageReduced0 = null;
//HObject ho_Region0 = null;
//HObject ho_RegionClosing0 = null;
//HObject ho_ConnectedRegion0 = null;
//HObject ho_SelectedRegions0 = null;
//HObject ho_Circle0 = null;
//// Local control variables
//HTuple hv_XField = null, hv_YField = null;
//HTuple hv_CenterROIR = null, hv_CenterROIC = null, hv_CenterMinArea = null;
//HTuple hv_CenterSFRThreshold = null;
//HTuple hv_CenterClosing = null;
//HTuple hv_Width = new HTuple();
//HTuple hv_Height = new HTuple(), hv_del = new HTuple();
//HTuple hv_delX = new HTuple(), hv_delY = new HTuple();
//HTuple hv_Area0 = new HTuple(), hv_Row0 = new HTuple(), hv_Row4 = new HTuple(), hv_Column0 = new HTuple();
//// Initialize local and output iconic variables
//HOperatorSet.GenEmptyObj(out ho_GrayImage);
//HOperatorSet.GenEmptyObj(out ho_Rectangle0);
//HOperatorSet.GenEmptyObj(out ho_ImageReduced0);
//HOperatorSet.GenEmptyObj(out ho_Region0);
//HOperatorSet.GenEmptyObj(out ho_RegionClosing0);
//HOperatorSet.GenEmptyObj(out ho_ConnectedRegion0);
//HOperatorSet.GenEmptyObj(out ho_SelectedRegions0);
//HOperatorSet.GenEmptyObj(out ho_Circle0);
//hv_CenterROIR = ParamSetMgr.GetInstance().GetIntParam("[SFR] nCenterROIW");
//hv_CenterROIC = ParamSetMgr.GetInstance().GetIntParam("[SFR] nCenterROIH");
//hv_CenterMinArea = ParamSetMgr.GetInstance().GetDoubleParam("MF中心对心最小面积");
//hv_CenterSFRThreshold = ParamSetMgr.GetInstance().GetDoubleParam("MF中心对心阈值设置");
//hv_CenterClosing = ParamSetMgr.GetInstance().GetDoubleParam("MF中心对心膨胀系数");
//double pixelSize = ParamSetMgr.GetInstance().GetDoubleParam("[Sensor] dPixelSize");
//ho_GrayImage.Dispose();
//HOperatorSet.Rgb1ToGray(ho_Image, out ho_GrayImage);
//HOperatorSet.GetImageSize(ho_GrayImage, out hv_Width, out hv_Height);
//ho_Rectangle0.Dispose();
//HOperatorSet.GenRectangle2(out ho_Rectangle0, hv_Height / 2, hv_Width / 2, 0, hv_CenterROIR, hv_CenterROIC);
//ho_ImageReduced0.Dispose();
//HOperatorSet.ReduceDomain(ho_GrayImage, ho_Rectangle0, out ho_ImageReduced0);
//ho_Region0.Dispose();
//HOperatorSet.Threshold(ho_ImageReduced0, out ho_Region0, hv_CenterSFRThreshold, 255);
//ho_RegionClosing0.Dispose();
//HOperatorSet.ClosingCircle(ho_Region0, out ho_RegionClosing0, hv_CenterClosing);
//ho_ConnectedRegion0.Dispose();
//HOperatorSet.Connection(ho_RegionClosing0, out ho_ConnectedRegion0);
//HOperatorSet.AreaCenter(ho_ConnectedRegion0, out hv_Area0, out hv_Row0, out hv_Column0);
//ho_SelectedRegions0.Dispose();
//HOperatorSet.SelectShape(ho_ConnectedRegion0, out ho_SelectedRegions0, "area", "and", hv_Area0.TupleMax(), 9999999);
//HOperatorSet.AreaCenter(ho_SelectedRegions0, out hv_Area0, out hv_Row0, out hv_Column0);
//dx = (hv_Column0.D - hv_Width / 2) * pixelSize / 1000.0;
//dy = (hv_Row0.D - hv_Height / 2) * pixelSize / 1000.0;
}
catch (Exception e)
{
return(false);
}
if (!MF)
{
return(true);//不选择计算MF ，直接返回
}
try
{
HObject ho_SelectedRegions1 = null;
HObject ho_SelectedRegions2 = null;
HObject ho_SelectedRegions3 = null;
HObject ho_SelectedRegions4 = null;
HTuple hv_XField = null, hv_YField = null;
HTuple hv_Corner1ROIR = null, hv_Corner1ROIC = null, hv_Corner1MinArea = null, hv_Corner1SFRThreshold = null, hv_Corner1Closing = null;
HTuple hv_Area1 = new HTuple(), hv_Area2 = new HTuple(), hv_Area3 = new HTuple(), hv_Area4 = new HTuple();
HTuple hv_Row1 = new HTuple(), hv_Row2 = new HTuple(), hv_Row3 = new HTuple(), hv_Row4 = new HTuple();
HTuple hv_Column1 = new HTuple(), hv_Column2 = new HTuple(), hv_Column3 = new HTuple(), hv_Column4 = new HTuple();
hv_XField = ParamSetMgr.GetInstance().GetDoubleParam("[SFR] dCorner1XField");
hv_YField = ParamSetMgr.GetInstance().GetDoubleParam("[SFR] dCorner1YField");
hv_Corner1ROIR = ParamSetMgr.GetInstance().GetIntParam("[SFR] nCorner1ROIW");
hv_Corner1ROIC = ParamSetMgr.GetInstance().GetIntParam("[SFR] nCorner1ROIH");
hv_Corner1MinArea = ParamSetMgr.GetInstance().GetDoubleParam("MF_Corner1最小面积");
hv_Corner1SFRThreshold = ParamSetMgr.GetInstance().GetDoubleParam("MF_Corner1阈值设置");
hv_Corner1Closing = ParamSetMgr.GetInstance().GetDoubleParam("MF_Corner1膨胀系数");
bool result = true;
result &= FindCenterRegions(ho_Image, hv_Corner1ROIR, hv_Corner1ROIC, -hv_XField, -hv_YField, hv_Corner1MinArea, hv_Corner1SFRThreshold, hv_Corner1Closing, ref ho_SelectedRegions1);
result &= FindCenterRegions(ho_Image, hv_Corner1ROIR, hv_Corner1ROIC, hv_XField, -hv_YField, hv_Corner1MinArea, hv_Corner1SFRThreshold, hv_Corner1Closing, ref ho_SelectedRegions2);
result &= FindCenterRegions(ho_Image, hv_Corner1ROIR, hv_Corner1ROIC, -hv_XField, hv_YField, hv_Corner1MinArea, hv_Corner1SFRThreshold, hv_Corner1Closing, ref ho_SelectedRegions3);
result &= FindCenterRegions(ho_Image, hv_Corner1ROIR, hv_Corner1ROIC, hv_XField, hv_YField, hv_Corner1MinArea, hv_Corner1SFRThreshold, hv_Corner1Closing, ref ho_SelectedRegions4);
if (!result)
{
return(false);
}
HOperatorSet.AreaCenter(ho_SelectedRegions1, out hv_Area1, out hv_Row1, out hv_Column1);
HOperatorSet.AreaCenter(ho_SelectedRegions2, out hv_Area2, out hv_Row2, out hv_Column2);
HOperatorSet.AreaCenter(ho_SelectedRegions3, out hv_Area3, out hv_Row3, out hv_Column3);
HOperatorSet.AreaCenter(ho_SelectedRegions4, out hv_Area4, out hv_Row4, out hv_Column4);
Array.Add(Math.Sqrt((hv_Row2.D - hv_Row1.D) * (hv_Row2.D - hv_Row1.D) + (hv_Column2.D - hv_Column1.D) * (hv_Column2.D - hv_Column1.D)));
Array.Add(Math.Sqrt((hv_Row4.D - hv_Row2.D) * (hv_Row4.D - hv_Row2.D) + (hv_Column4.D - hv_Column2.D) * (hv_Column4.D - hv_Column2.D)));
Array.Add(Math.Sqrt((hv_Row3.D - hv_Row4.D) * (hv_Row3.D - hv_Row4.D) + (hv_Column3.D - hv_Column4.D) * (hv_Column3.D - hv_Column4.D)));
Array.Add(Math.Sqrt((hv_Row1.D - hv_Row3.D) * (hv_Row1.D - hv_Row3.D) + (hv_Column1.D - hv_Column3.D) * (hv_Column1.D - hv_Column3.D)));
Array.Add(Math.Sqrt((hv_Row4.D - hv_Row1.D) * (hv_Row4.D - hv_Row1.D) + (hv_Column4.D - hv_Column1.D) * (hv_Column4.D - hv_Column1.D)));
Array.Add(Math.Sqrt((hv_Row2.D - hv_Row3.D) * (hv_Row2.D - hv_Row3.D) + (hv_Column2.D - hv_Column3.D) * (hv_Column2.D - hv_Column3.D)));
Array.Add(hv_Area0.D / 100);
Array.Add(hv_Area1.D / 100);
Array.Add(hv_Area2.D / 100);
Array.Add(hv_Area3.D / 100);
Array.Add(hv_Area4.D / 100);
////对心
//HObject ho_Rectangle1 = null, ho_Rectangle2 = null, ho_Rectangle3 = null, ho_Rectangle4 = null;
//HObject ho_ImageReduced1 = null, ho_ImageReduced2 = null, ho_ImageReduced3 = null, ho_ImageReduced4 = null;
//HObject ho_Region1 = null, ho_Region2 = null, ho_Region3 = null, ho_Region4 = null;
//HObject ho_RegionClosing1 = null, ho_RegionClosing2 = null, ho_RegionClosing3 = null, ho_RegionClosing4 = null;
//HObject ho_ConnectedRegion1 = null, ho_ConnectedRegion2 = null, ho_ConnectedRegion3 = null, ho_ConnectedRegion4 = null;
//HObject ho_SelectedRegions1 = null, ho_SelectedRegions2 = null, ho_SelectedRegions3 = null, ho_SelectedRegions4 = null;
//HObject ho_Circle1 = null, ho_Circle2 = null, ho_Circle3 = null, ho_Circle4 = null;
//// Local control variables
//HTuple hv_XField = null, hv_YField = null;
//HTuple hv_Corner1ROIR = null;
//HTuple hv_Corner1ROIC = null, hv_Corner1MinArea = null;
//HTuple hv_Corner1SFRThreshold = null;
//HTuple hv_Row0 = new HTuple(), hv_Column0 = new HTuple();
//HTuple hv_Corner1Closing = null, hv_Width = new HTuple();
//HTuple hv_Height = new HTuple(), hv_del = new HTuple();
//HTuple hv_delX = new HTuple(), hv_delY = new HTuple();
//HTuple hv_Area1 = new HTuple(), hv_Area2 = new HTuple(), hv_Area3 = new HTuple(), hv_Area4 = new HTuple();
//HTuple hv_Row1 = new HTuple(), hv_Row2 = new HTuple(), hv_Row3 = new HTuple(), hv_Row4 = new HTuple();
//HTuple hv_Column1 = new HTuple(), hv_Column2 = new HTuple(), hv_Column3 = new HTuple(), hv_Column4 = new HTuple();
//// Initialize local and output iconic variables
//HOperatorSet.GenEmptyObj(out ho_GrayImage);
//HOperatorSet.GenEmptyObj(out ho_Rectangle1);
//HOperatorSet.GenEmptyObj(out ho_Rectangle2);
//HOperatorSet.GenEmptyObj(out ho_Rectangle3);
//HOperatorSet.GenEmptyObj(out ho_Rectangle4);
//HOperatorSet.GenEmptyObj(out ho_ImageReduced1);
//HOperatorSet.GenEmptyObj(out ho_ImageReduced2);
//HOperatorSet.GenEmptyObj(out ho_ImageReduced3);
//HOperatorSet.GenEmptyObj(out ho_ImageReduced4);
//HOperatorSet.GenEmptyObj(out ho_Region1);
//HOperatorSet.GenEmptyObj(out ho_Region2);
//HOperatorSet.GenEmptyObj(out ho_Region3);
//HOperatorSet.GenEmptyObj(out ho_Region4);
//HOperatorSet.GenEmptyObj(out ho_RegionClosing1);
//HOperatorSet.GenEmptyObj(out ho_RegionClosing2);
//HOperatorSet.GenEmptyObj(out ho_RegionClosing3);
//HOperatorSet.GenEmptyObj(out ho_RegionClosing4);
//HOperatorSet.GenEmptyObj(out ho_ConnectedRegion1);
//HOperatorSet.GenEmptyObj(out ho_ConnectedRegion2);
//HOperatorSet.GenEmptyObj(out ho_ConnectedRegion3);
//HOperatorSet.GenEmptyObj(out ho_ConnectedRegion4);
//HOperatorSet.GenEmptyObj(out ho_SelectedRegions1);
//HOperatorSet.GenEmptyObj(out ho_SelectedRegions2);
//HOperatorSet.GenEmptyObj(out ho_SelectedRegions3);
//HOperatorSet.GenEmptyObj(out ho_SelectedRegions4);
//HOperatorSet.GenEmptyObj(out ho_Circle1);
//HOperatorSet.GenEmptyObj(out ho_Circle2);
//HOperatorSet.GenEmptyObj(out ho_Circle3);
//HOperatorSet.GenEmptyObj(out ho_Circle4);
//hv_XField = ParamSetMgr.GetInstance().GetDoubleParam("[SFR] dCorner1XField");
//hv_YField = ParamSetMgr.GetInstance().GetDoubleParam("[SFR] dCorner1YField");
//hv_Corner1ROIR = ParamSetMgr.GetInstance().GetIntParam("[SFR] nCorner1ROIW");
//hv_Corner1ROIC = ParamSetMgr.GetInstance().GetIntParam("[SFR] nCorner1ROIH");
//hv_Corner1MinArea = ParamSetMgr.GetInstance().GetDoubleParam("MF_Corner1最小面积");
//hv_Corner1SFRThreshold = ParamSetMgr.GetInstance().GetDoubleParam("MF_Corner1阈值设置");
//hv_Corner1Closing = ParamSetMgr.GetInstance().GetDoubleParam("MF_Corner1膨胀系数");
//ho_GrayImage.Dispose();
//HOperatorSet.Rgb1ToGray(ho_Image, out ho_GrayImage);
////初步对心
//HOperatorSet.GetImageSize(ho_GrayImage, out hv_Width, out hv_Height);
//hv_delX = hv_Width * hv_XField;
//hv_delY = hv_Height * hv_YField;
//ho_Rectangle1.Dispose();
//HOperatorSet.GenRectangle2(out ho_Rectangle1, (hv_Height / 2) - (hv_delY / 2), (hv_Width / 2) - (hv_delX / 2), 0, hv_Corner1ROIR, hv_Corner1ROIC);
//ho_Rectangle2.Dispose();
//HOperatorSet.GenRectangle2(out ho_Rectangle2, (hv_Height / 2) - (hv_delY / 2), (hv_Width / 2) + (hv_delX / 2), 0, hv_Corner1ROIR, hv_Corner1ROIC);
//ho_Rectangle3.Dispose();
//HOperatorSet.GenRectangle2(out ho_Rectangle3, (hv_Height / 2) + (hv_delY / 2), (hv_Width / 2) - (hv_delX / 2), 0, hv_Corner1ROIR, hv_Corner1ROIC);
//ho_Rectangle4.Dispose();
//HOperatorSet.GenRectangle2(out ho_Rectangle4, (hv_Height / 2) + (hv_delY / 2), (hv_Width / 2) + (hv_delX / 2), 0, hv_Corner1ROIR, hv_Corner1ROIC);
//ho_ImageReduced1.Dispose();
//HOperatorSet.ReduceDomain(ho_GrayImage, ho_Rectangle1, out ho_ImageReduced1);
//ho_ImageReduced2.Dispose();
//HOperatorSet.ReduceDomain(ho_GrayImage, ho_Rectangle2, out ho_ImageReduced2);
//ho_ImageReduced3.Dispose();
//HOperatorSet.ReduceDomain(ho_GrayImage, ho_Rectangle3, out ho_ImageReduced3);
//ho_ImageReduced4.Dispose();
//HOperatorSet.ReduceDomain(ho_GrayImage, ho_Rectangle4, out ho_ImageReduced4);
//ho_Region1.Dispose();
//HOperatorSet.Threshold(ho_ImageReduced1, out ho_Region1, hv_Corner1SFRThreshold, 255);
//ho_Region2.Dispose();
//HOperatorSet.Threshold(ho_ImageReduced2, out ho_Region2, hv_Corner1SFRThreshold, 255);
//ho_Region3.Dispose();
//HOperatorSet.Threshold(ho_ImageReduced3, out ho_Region3, hv_Corner1SFRThreshold, 255);
//ho_Region4.Dispose();
//HOperatorSet.Threshold(ho_ImageReduced4, out ho_Region4, hv_Corner1SFRThreshold, 255);
//ho_RegionClosing1.Dispose();
//HOperatorSet.ClosingCircle(ho_Region1, out ho_RegionClosing1, hv_Corner1Closing);
//ho_RegionClosing2.Dispose();
//HOperatorSet.ClosingCircle(ho_Region2, out ho_RegionClosing2, hv_Corner1Closing);
//ho_RegionClosing3.Dispose();
//HOperatorSet.ClosingCircle(ho_Region3, out ho_RegionClosing3, hv_Corner1Closing);
//ho_RegionClosing4.Dispose();
//HOperatorSet.ClosingCircle(ho_Region4, out ho_RegionClosing4, hv_Corner1Closing);
//ho_ConnectedRegion1.Dispose();
//HOperatorSet.Connection(ho_RegionClosing1, out ho_ConnectedRegion1);
//ho_ConnectedRegion2.Dispose();
//HOperatorSet.Connection(ho_RegionClosing2, out ho_ConnectedRegion2);
//ho_ConnectedRegion3.Dispose();
//HOperatorSet.Connection(ho_RegionClosing3, out ho_ConnectedRegion3);
//ho_ConnectedRegion4.Dispose();
//HOperatorSet.Connection(ho_RegionClosing4, out ho_ConnectedRegion4);
//HOperatorSet.AreaCenter(ho_ConnectedRegion1, out hv_Area1, out hv_Row0, out hv_Column0);
//HOperatorSet.AreaCenter(ho_ConnectedRegion2, out hv_Area2, out hv_Row0, out hv_Column0);
//HOperatorSet.AreaCenter(ho_ConnectedRegion3, out hv_Area3, out hv_Row0, out hv_Column0);
//HOperatorSet.AreaCenter(ho_ConnectedRegion4, out hv_Area4, out hv_Row0, out hv_Column0);
//ho_SelectedRegions1.Dispose();
//HOperatorSet.SelectShape(ho_ConnectedRegion1, out ho_SelectedRegions1, "area", "and", hv_Area1.TupleMax(), 9999999);
//ho_SelectedRegions2.Dispose();
//HOperatorSet.SelectShape(ho_ConnectedRegion2, out ho_SelectedRegions2, "area", "and", hv_Area2.TupleMax(), 9999999);
//ho_SelectedRegions3.Dispose();
//HOperatorSet.SelectShape(ho_ConnectedRegion3, out ho_SelectedRegions3, "area", "and", hv_Area3.TupleMax(), 9999999);
//ho_SelectedRegions4.Dispose();
//HOperatorSet.SelectShape(ho_ConnectedRegion4, out ho_SelectedRegions4, "area", "and", hv_Area4.TupleMax(), 9999999);
}
catch (Exception e)
{
return(false);
}
return(true);
}
else
{
AlignmentInfo info = new AlignmentInfo();
try
{
if (bmp == null)
{
return(false);
}
Bitmap temp = (Bitmap)bmp.Clone();
bool bRet = false;
int nWidth = temp.Width;
int nHeight = temp.Height;
byte[] byBuffer = ImageChangeHelper.Instance.Rgb2Gray(bmp);
unsafe
{
fixed(byte *pbuffer = byBuffer)
{
bRet = ActiveAlignment.GetAlignmentValue_Sector(pbuffer, nWidth, nHeight, ref info);
}
}
temp.Dispose();
dx = info.dSx;
dy = info.dSy;
return(bRet);
}
catch (Exception ex)
{
return(false);
}
}
}
public override bool Findcenter(Bitmap bmp, ref double dx, ref double dy, ref List <double> Array, bool MF)
{
if (ParamSetMgr.GetInstance().GetBoolParam("更换对心算法"))
{
HObject ho_Image = null, ho_GrayImage = null; HTuple hv_Area0 = new HTuple();
try
{
ImageChangeHelper.Instance.Bitmap2HObject((Bitmap)bmp.Clone(), ref ho_Image);
if (ho_Image == null)
{
return(false);
}
}
catch
{
return(false);
}
try
{
HObject ho_SelectedRegions0 = null;
HTuple hv_CenterROIR = null, hv_CenterROIC = null, hv_CenterMinArea = null;
HTuple hv_CenterSFRThreshold = null;
HTuple hv_CenterClosing = null, hv_Width = new HTuple(), hv_Height = new HTuple();
HTuple hv_Row0 = new HTuple(), hv_Column0 = new HTuple();
hv_CenterROIR = ParamSetMgr.GetInstance().GetIntParam("[SFR] nCenterROIW");
hv_CenterROIC = ParamSetMgr.GetInstance().GetIntParam("[SFR] nCenterROIH");
hv_CenterMinArea = ParamSetMgr.GetInstance().GetDoubleParam("MF中心对心最小面积");
hv_CenterSFRThreshold = ParamSetMgr.GetInstance().GetDoubleParam("MF中心对心阈值设置");
hv_CenterClosing = ParamSetMgr.GetInstance().GetDoubleParam("MF中心对心膨胀系数");
double pixelSize = ParamSetMgr.GetInstance().GetDoubleParam("[Sensor] dPixelSize");
HOperatorSet.Rgb1ToGray(ho_Image, out ho_GrayImage);
HOperatorSet.GetImageSize(ho_GrayImage, out hv_Width, out hv_Height);
bool result = FindCenterRegions(ho_Image, hv_CenterROIR, hv_CenterROIC, 0, 0, hv_CenterMinArea, hv_CenterSFRThreshold, hv_CenterClosing, ref ho_SelectedRegions0);
if (!result)
{
return(false);
}
HOperatorSet.AreaCenter(ho_SelectedRegions0, out hv_Area0, out hv_Row0, out hv_Column0);
dx = (hv_Column0.D - hv_Width / 2) * pixelSize / 1000.0;
dy = (hv_Row0.D - hv_Height / 2) * pixelSize / 1000.0;
}
catch (Exception e)
{
return(false);
}
if (!MF)
{
return(true);//不选择计算MF ，直接返回
}
try
{
HObject ho_SelectedRegions1 = null;
HObject ho_SelectedRegions2 = null;
HObject ho_SelectedRegions3 = null;
HObject ho_SelectedRegions4 = null;
HTuple hv_XField = null, hv_YField = null;
HTuple hv_Corner1ROIR = null, hv_Corner1ROIC = null, hv_Corner1MinArea = null, hv_Corner1SFRThreshold = null, hv_Corner1Closing = null;
HTuple hv_Area1 = new HTuple(), hv_Area2 = new HTuple(), hv_Area3 = new HTuple(), hv_Area4 = new HTuple();
HTuple hv_Row1 = new HTuple(), hv_Row2 = new HTuple(), hv_Row3 = new HTuple(), hv_Row4 = new HTuple();
HTuple hv_Column1 = new HTuple(), hv_Column2 = new HTuple(), hv_Column3 = new HTuple(), hv_Column4 = new HTuple();
hv_XField = ParamSetMgr.GetInstance().GetDoubleParam("[SFR] dCorner1XField");
hv_YField = ParamSetMgr.GetInstance().GetDoubleParam("[SFR] dCorner1YField");
hv_Corner1ROIR = ParamSetMgr.GetInstance().GetIntParam("[SFR] nCorner1ROIW");
hv_Corner1ROIC = ParamSetMgr.GetInstance().GetIntParam("[SFR] nCorner1ROIH");
hv_Corner1MinArea = ParamSetMgr.GetInstance().GetDoubleParam("MF_Corner1最小面积");
hv_Corner1SFRThreshold = ParamSetMgr.GetInstance().GetDoubleParam("MF_Corner1阈值设置");
hv_Corner1Closing = ParamSetMgr.GetInstance().GetDoubleParam("MF_Corner1膨胀系数");
bool result = true;
result &= FindCenterRegions(ho_Image, hv_Corner1ROIR, hv_Corner1ROIC, -hv_XField, -hv_YField, hv_Corner1MinArea, hv_Corner1SFRThreshold, hv_Corner1Closing, ref ho_SelectedRegions1);
result &= FindCenterRegions(ho_Image, hv_Corner1ROIR, hv_Corner1ROIC, hv_XField, -hv_YField, hv_Corner1MinArea, hv_Corner1SFRThreshold, hv_Corner1Closing, ref ho_SelectedRegions2);
result &= FindCenterRegions(ho_Image, hv_Corner1ROIR, hv_Corner1ROIC, -hv_XField, hv_YField, hv_Corner1MinArea, hv_Corner1SFRThreshold, hv_Corner1Closing, ref ho_SelectedRegions3);
result &= FindCenterRegions(ho_Image, hv_Corner1ROIR, hv_Corner1ROIC, hv_XField, hv_YField, hv_Corner1MinArea, hv_Corner1SFRThreshold, hv_Corner1Closing, ref ho_SelectedRegions4);
if (!result)
{
return(false);
}
HOperatorSet.AreaCenter(ho_SelectedRegions1, out hv_Area1, out hv_Row1, out hv_Column1);
HOperatorSet.AreaCenter(ho_SelectedRegions2, out hv_Area2, out hv_Row2, out hv_Column2);
HOperatorSet.AreaCenter(ho_SelectedRegions3, out hv_Area3, out hv_Row3, out hv_Column3);
HOperatorSet.AreaCenter(ho_SelectedRegions4, out hv_Area4, out hv_Row4, out hv_Column4);
Array.Add(Math.Sqrt((hv_Row2.D - hv_Row1.D) * (hv_Row2.D - hv_Row1.D) + (hv_Column2.D - hv_Column1.D) * (hv_Column2.D - hv_Column1.D)));
Array.Add(Math.Sqrt((hv_Row4.D - hv_Row2.D) * (hv_Row4.D - hv_Row2.D) + (hv_Column4.D - hv_Column2.D) * (hv_Column4.D - hv_Column2.D)));
Array.Add(Math.Sqrt((hv_Row3.D - hv_Row4.D) * (hv_Row3.D - hv_Row4.D) + (hv_Column3.D - hv_Column4.D) * (hv_Column3.D - hv_Column4.D)));
Array.Add(Math.Sqrt((hv_Row1.D - hv_Row3.D) * (hv_Row1.D - hv_Row3.D) + (hv_Column1.D - hv_Column3.D) * (hv_Column1.D - hv_Column3.D)));
Array.Add(Math.Sqrt((hv_Row4.D - hv_Row1.D) * (hv_Row4.D - hv_Row1.D) + (hv_Column4.D - hv_Column1.D) * (hv_Column4.D - hv_Column1.D)));
Array.Add(Math.Sqrt((hv_Row2.D - hv_Row3.D) * (hv_Row2.D - hv_Row3.D) + (hv_Column2.D - hv_Column3.D) * (hv_Column2.D - hv_Column3.D)));
Array.Add(hv_Area0.D / 100);
Array.Add(hv_Area1.D / 100);
Array.Add(hv_Area2.D / 100);
Array.Add(hv_Area3.D / 100);
Array.Add(hv_Area4.D / 100);
}
catch (Exception e)
{
return(false);
}
return(true);
}
else
{
AlignmentInfo info = new AlignmentInfo();
try
{
if (bmp == null)
{
return(false);
}
Bitmap temp = (Bitmap)bmp.Clone();
bool bRet = false;
int nWidth = temp.Width;
int nHeight = temp.Height;
byte[] byBuffer = ImageChangeHelper.Instance.Rgb2Gray(bmp);
unsafe
{
fixed(byte *pbuffer = byBuffer)
{
bRet = ActiveAlignment.GetAlignmentValue(pbuffer, nWidth, nHeight, ref info);
}
}
temp.Dispose();
dx = info.dSx;
dy = info.dSy;
return(bRet);
}
catch (Exception ex)
{
return(false);
}
}
}
/// <summary>
/// Inicializa una nueva instancia de la clase <see cref="Style"/> con una cadena como base.
/// </summary>
/// <param name="text">Texto conteniendo el estilo.</param>
public Style(string text)
{
var regex = new Regex(RegularExpressions.RegexStyle);
var match = regex.Match(text);
if (match.Success)
{
Name = match.Groups["name"].Value;
FontName = match.Groups["fontName"].Value;
FontSize = double.Parse(match.Groups["fontSize"].Value);
PrimaryColor = new TagTypeColor(match.Groups["color1"].Value);
SecondaryColor = new TagTypeColor(match.Groups["color2"].Value);
OutlineColor = new TagTypeColor(match.Groups["color3"].Value);
BackColor = new TagTypeColor(match.Groups["color4"].Value);
PrimaryAlpha = Maths.HexToInt(match.Groups["alpha1"].Value);
SecondaryAlpha = Maths.HexToInt(match.Groups["alpha2"].Value);
OutlineAlpha = Maths.HexToInt(match.Groups["alpha3"].Value);
BackAlpha = Maths.HexToInt(match.Groups["alpha4"].Value);
Bold = false;
if (match.Groups["bold"].Value == "-1")
{
Bold = true;
}
Italic = false;
if (match.Groups["italic"].Value == "-1")
{
Italic = true;
}
Underline = false;
if (match.Groups["underline"].Value == "-1")
{
Underline = true;
}
StrikeOut = false;
if (match.Groups["strikeout"].Value == "-1")
{
StrikeOut = true;
}
Bold = false;
if (match.Groups["bold"].Value == "-1")
{
Bold = true;
}
ScaleX = double.Parse(match.Groups["scaleX"].Value);
ScaleY = double.Parse(match.Groups["scaleX"].Value);
Spacing = double.Parse(match.Groups["spacing"].Value);
Angle = double.Parse(match.Groups["angle"].Value);
BorderStyle = false;
if (match.Groups["borderStyle"].Value == "3")
{
StrikeOut = true;
}
Outline = double.Parse(match.Groups["outline"].Value);
Shadow = double.Parse(match.Groups["shadow"].Value);
Alignment = AlignmentInfo.StringToAlignment(match.Groups["alignment"].Value);
MarginLeft = int.Parse(match.Groups["marginL"].Value);
MarginRight = int.Parse(match.Groups["marginR"].Value);
MarginVertical = int.Parse(match.Groups["marginV"].Value);
Encoding = CodificacionesInfo.StringToCodificacion(match.Groups["encoding"].Value);
}
}
/// <summary>
/// Devuelve una cadena con el estilo preparado para un script ASS: "Style: Default,Arial,20...".
/// </summary>
public override string ToString()
{
var _Bold = 0;
var _Italic = 0;
var _Underline = 0;
var _StrikeOut = 0;
var _BorderStyle = 1;
var _Alignment = 5;
var _Encoding = 1;
var _Color1 = "";
var _Color2 = "";
var _Color3 = "";
var _Color4 = "";
if (Bold)
{
_Bold = -1;
}
if (Italic)
{
_Italic = -1;
}
if (Underline)
{
_Underline = -1;
}
if (StrikeOut)
{
_StrikeOut = -1;
}
if (BorderStyle)
{
_BorderStyle = 3;
}
_Alignment = AlignmentInfo.AlignmentToInt(Alignment);
_Encoding = (int)Encoding;
_Color1 = string.Format("&H{0:00}{1:00}{2:00}{3:00}",
Maths.IntToHex(PrimaryAlpha),
Maths.IntToHex(PrimaryColor.Blue),
Maths.IntToHex(PrimaryColor.Green),
Maths.IntToHex(PrimaryColor.Red));
_Color2 = string.Format("&H{0:00}{1:00}{2:00}{3:00}",
Maths.IntToHex(SecondaryAlpha),
Maths.IntToHex(SecondaryColor.Blue),
Maths.IntToHex(SecondaryColor.Green),
Maths.IntToHex(SecondaryColor.Red));
_Color3 = string.Format("&H{0:00}{1:00}{2:00}{3:00}",
Maths.IntToHex(OutlineAlpha),
Maths.IntToHex(OutlineColor.Blue),
Maths.IntToHex(OutlineColor.Green),
Maths.IntToHex(OutlineColor.Red));
_Color4 = string.Format("&H{0:00}{1:00}{2:00}{3:00}",
Maths.IntToHex(BackAlpha),
Maths.IntToHex(BackColor.Blue),
Maths.IntToHex(BackColor.Green),
Maths.IntToHex(BackColor.Red));
return(string.Format("Style: {0},{1},{2},{3},{4},{5},{6},{7},{8},{9},{10},{11},{12},{13},{14},{15},{16},{17},{18},{19},{20},{21},{22}", Name, FontName, FontSize, _Color1, _Color2, _Color3, _Color4, _Bold, _Italic, _Underline, _StrikeOut, ScaleX, ScaleY, Spacing, Angle, _BorderStyle, Outline, Shadow, _Alignment, MarginLeft, MarginRight, MarginVertical, _Encoding));
}
/// <summary>
/// Initializes a new instance of the PairwiseAlignmentAttributes class.
/// </summary>
public PamsamAlignmentAttributes()
{
AlignmentInfo alignmentAttribute;
attributes = new Dictionary <string, AlignmentInfo>();
alignmentAttribute = new AlignmentInfo(
KmerLength,
"Kmer Length",
true,
"3",
AlignmentInfo.IntType,
null);
attributes.Add(KmerLength, alignmentAttribute);
StringListValidator listValidator = new StringListValidator(
Enum.GetNames(typeof(DistanceFunctionTypes))
);
alignmentAttribute = new AlignmentInfo(
DistanceFunctionType,
"Distance Function Type",
true,
DistanceFunctionTypes.EuclideanDistance.ToString(),
AlignmentInfo.StringListType,
listValidator);
attributes.Add(DistanceFunctionType, alignmentAttribute);
listValidator = new StringListValidator(
Enum.GetNames(typeof(UpdateDistanceMethodsTypes))
);
alignmentAttribute = new AlignmentInfo(
UpdateDistanceMethodsType,
"Update Distance Methods Type",
true,
UpdateDistanceMethodsTypes.Average.ToString(),
AlignmentInfo.StringListType,
listValidator);
attributes.Add(UpdateDistanceMethodsType, alignmentAttribute);
listValidator = new StringListValidator(
Enum.GetNames(typeof(ProfileAlignerNames))
);
alignmentAttribute = new AlignmentInfo(
ProfileAlignerName,
"Profile Aligner Name",
true,
ProfileAlignerNames.NeedlemanWunschProfileAligner.ToString(),
AlignmentInfo.StringListType,
listValidator);
attributes.Add(ProfileAlignerName, alignmentAttribute);
listValidator = new StringListValidator(
Enum.GetNames(typeof(ProfileScoreFunctionNames))
);
alignmentAttribute = new AlignmentInfo(
ProfileScoreFunctionName,
"Profile Score Function Name",
true,
ProfileScoreFunctionNames.WeightedInnerProduct.ToString(),
AlignmentInfo.StringListType,
listValidator);
attributes.Add(ProfileScoreFunctionName, alignmentAttribute);
listValidator = new StringListValidator(
SM.StandardSimilarityMatrix.AmbiguousDna.ToString(),
SM.StandardSimilarityMatrix.AmbiguousRna.ToString(),
SM.StandardSimilarityMatrix.Blosum45.ToString(),
SM.StandardSimilarityMatrix.Blosum50.ToString(),
SM.StandardSimilarityMatrix.Blosum62.ToString(),
SM.StandardSimilarityMatrix.Blosum80.ToString(),
SM.StandardSimilarityMatrix.Blosum90.ToString(),
SM.StandardSimilarityMatrix.Pam250.ToString(),
SM.StandardSimilarityMatrix.Pam30.ToString(),
SM.StandardSimilarityMatrix.Pam70.ToString()
);
alignmentAttribute = new AlignmentInfo(
SimilarityMatrix,
"Similarity Matrix",
true,
SM.StandardSimilarityMatrix.AmbiguousDna.ToString(),
AlignmentInfo.StringListType,
listValidator);
attributes.Add(SimilarityMatrix, alignmentAttribute);
alignmentAttribute = new AlignmentInfo(
GapOpenPenalty,
"Gap Open Penalty",
true,
"-4",
AlignmentInfo.IntType,
null);
attributes.Add(GapOpenPenalty, alignmentAttribute);
alignmentAttribute = new AlignmentInfo(
GapExtendPenalty,
"Gap Extention Penalty",
true,
"-1",
AlignmentInfo.IntType,
null);
attributes.Add(GapExtendPenalty, alignmentAttribute);
alignmentAttribute = new AlignmentInfo(
NumberOfPartitions,
"Number Of Partitions",
true,
(Environment.ProcessorCount * 2).ToString(),
AlignmentInfo.IntType,
null);
attributes.Add(NumberOfPartitions, alignmentAttribute);
alignmentAttribute = new AlignmentInfo(
DegreeOfParallelism,
"Degree Of Parallelism",
true,
Environment.ProcessorCount.ToString(),
AlignmentInfo.IntType,
null);
attributes.Add(DegreeOfParallelism, alignmentAttribute);
}
