public void Parse_ShouldAssumeParsingAmbiguousSequenceAsNucleicAcidSequence()
{
const string nucleicAcidSequenceString = "ABCD";
IActualSequence sequenceData = ActualSequenceParser.Parse(nucleicAcidSequenceString);
Assert.IsNotNull(sequenceData);
Assert.IsInstanceOfType(sequenceData, typeof(NucleicAcidSequence));
var nucelicAcidSequenceData = (NucleicAcidSequence)sequenceData;
Assert.AreEqual(nucleicAcidSequenceString, nucelicAcidSequenceData.Characters);
}
public void Parse_ShouldParseAminoAcidSequence()
{
const string aminoAcidSequenceString = "ABCZ";
IActualSequence sequenceData = ActualSequenceParser.Parse(aminoAcidSequenceString);
Assert.IsNotNull(sequenceData);
Assert.IsInstanceOfType(sequenceData, typeof(AminoAcidSequence));
var aminoAcidSequenceData = (AminoAcidSequence)sequenceData;
Assert.AreEqual(aminoAcidSequenceString, aminoAcidSequenceData.Characters);
}
private static Sequence ParseBase(IEnumerable <string> lines)
{
try
{
IEnumerable <string> nonBlankLines = lines.Where(line => !string.IsNullOrWhiteSpace(line));
Header header = Header.Parse(nonBlankLines.First());
IActualSequence sequenceData = ActualSequenceParser.Parse(nonBlankLines.Skip(1));
return(new Sequence(header, sequenceData));
}
catch (FormatException ex)
{
throw new FormatException("The collection of sequence lines are not in the correct format.", ex);
}
}
public void Parse_ShouldRejectAllWhitespaceText()
{
_ = ActualSequenceParser.Parse(" ");
}
public void Parse_ShouldRejectNullLinesCollection()
{
_ = ActualSequenceParser.Parse((IEnumerable <string>)null);
}
public void Parse_ShouldRejectNullText()
{
_ = ActualSequenceParser.Parse((string)null);
}